BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0116500 Os01g0116500|Os01g0116500
(176 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0116500 Conserved hypothetical protein 337 4e-93
Os01g0115600 Similar to LRK14 155 1e-38
Os01g0115900 Protein kinase-like domain containing protein 154 4e-38
Os01g0113200 Similar to LRK14 122 2e-28
Os01g0113800 Protein kinase-like domain containing protein 117 5e-27
Os01g0116300 Conserved hypothetical protein 106 8e-24
Os01g0114500 Similar to LRK14 103 8e-23
Os01g0114700 Similar to LRK33 100 1e-21
Os01g0117500 Similar to LRK14 99 2e-21
Os01g0117100 Similar to LRK14 93 8e-20
Os01g0117300 Protein kinase-like domain containing protein 69 1e-12
>Os01g0116500 Conserved hypothetical protein
Length = 176
Score = 337 bits (863), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 165/176 (93%), Positives = 165/176 (93%)
Query: 1 MAKXXXXXXXXXXXIYAATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPSCGTP 60
MAK IYAATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPSCGTP
Sbjct: 1 MAKLLVVVLLLSLLIYAATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPSCGTP 60
Query: 61 LMELSCSGQDTILYHPVLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVY 120
LMELSCSGQDTILYHPVLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVY
Sbjct: 61 LMELSCSGQDTILYHPVLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVY 120
Query: 121 KPQKLEAASLPDCKVVSNGIQAPSTFKETENGVIGVDELDASHSFFGPSPPIHAQA 176
KPQKLEAASLPDCKVVSNGIQAPSTFKETENGVIGVDELDASHSFFGPSPPIHAQA
Sbjct: 121 KPQKLEAASLPDCKVVSNGIQAPSTFKETENGVIGVDELDASHSFFGPSPPIHAQA 176
>Os01g0115600 Similar to LRK14
Length = 621
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 92/119 (77%), Gaps = 4/119 (3%)
Query: 17 AATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPSCGTPLMELSCSGQDTILYHP 76
+ATAWD E FF K+C ++CSKHGP++RFP RL++Q PSCG P M LSCSGQDTIL HP
Sbjct: 22 SATAWDDEDFF--KTCSSHRCSKHGPEIRFPFRLSTQPPSCGAPGMHLSCSGQDTILNHP 79
Query: 77 VLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVYKPQ--KLEAASLPDC 133
VLG CKVT ISY +A M++I VDS+PHCPLQKL+S N ST VYKPQ + + A+L C
Sbjct: 80 VLGPCKVTEISYSYATMNVIPPVDSSPHCPLQKLMSKNQSTSVYKPQGPQSQGATLVVC 138
>Os01g0115900 Protein kinase-like domain containing protein
Length = 530
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 88/116 (75%), Gaps = 2/116 (1%)
Query: 17 AATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPSCGTPLMELSCSGQDTILYHP 76
ATA D E FF K+C ++CSKHGP++R+P RL++Q PSCG P M+LSCSGQDTIL HP
Sbjct: 23 VATASDDEDFF--KTCSSHRCSKHGPEIRYPFRLSTQPPSCGAPGMQLSCSGQDTILDHP 80
Query: 77 VLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVYKPQKLEAASLPD 132
VLGSCKVT I Y+H M+ I LVDS+PHC L K IS N ST VY+P L+AASL D
Sbjct: 81 VLGSCKVTMIYYRHVIMNAIPLVDSSPHCLLHKFISVNQSTAVYRPHTLKAASLVD 136
>Os01g0113200 Similar to LRK14
Length = 617
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Query: 18 ATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPSCGTPLMELSCSGQDTILYHPV 77
AT D FF ++CPP++CS GP ++FP RL S S SCG P M+LSCSGQDT+L H V
Sbjct: 21 ATESDEADFF--RNCPPSRCSSDGPDIKFPFRLESSSSSCGAPGMQLSCSGQDTLLLHHV 78
Query: 78 LGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVYKPQKLEAASLPDC 133
LG KVT I Y + ++I+ L +S C LQK+IS N ST VYK + ASL C
Sbjct: 79 LGLSKVTGIDYIYGVINIVPLAESWSQCALQKIISANYSTSVYKQYGFQYASLVSC 134
>Os01g0113800 Protein kinase-like domain containing protein
Length = 630
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 75/111 (67%), Gaps = 4/111 (3%)
Query: 17 AATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSP--SCGTPLMELSCSGQDTILY 74
A+++WD + FF K CPP++CSKHGP++RFP RL S + SCG+ +L CSGQDTIL+
Sbjct: 23 ASSSWDDQDFF--KHCPPSRCSKHGPEIRFPHRLQSSNTPSSCGSSHAKLICSGQDTILH 80
Query: 75 HPVLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVYKPQKL 125
HP LG CKVTAI YK A M II S+ C L K STNLS DV +L
Sbjct: 81 HPFLGPCKVTAIDYKKAVMKIIPFGGSSSPCLLHKFNSTNLSADVNDQNQL 131
>Os01g0116300 Conserved hypothetical protein
Length = 310
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 74/110 (67%), Gaps = 4/110 (3%)
Query: 18 ATAWDAESFFNFKSCPPNQCSKHGPKVRFP--LRLASQSPSCGTPLMELSCSGQDTILYH 75
A+ W+ + FF + CP ++CS GP++RFP L+ ++ S +CG +L+CSGQDTIL+H
Sbjct: 27 ASGWEDQDFF--RHCPVSRCSDGGPEIRFPHGLQSSNTSSACGASCAKLACSGQDTILHH 84
Query: 76 PVLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVYKPQKL 125
P LG CKVT+I YK A MSII LV S+ CPLQKLI NL Y KL
Sbjct: 85 PFLGPCKVTSIDYKEAIMSIIPLVYSSSPCPLQKLIFDNLQPYDYHRCKL 134
>Os01g0114500 Similar to LRK14
Length = 580
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 8/106 (7%)
Query: 18 ATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSPS--CGTPLMELSCSGQDTILYH 75
A+ WD FF + CPP++CSK GP++RFP RL S + S C L+CSGQDTIL+H
Sbjct: 27 ASGWDDHDFF--RHCPPSRCSKDGPEIRFPHRLESSNTSSACRASCARLACSGQDTILHH 84
Query: 76 PVLGSCKVTAISYKHAAMSIILLVDSTPH-CPLQKLISTNLSTDVY 120
P+LG CKVT+I YK A ++II L+ P CPLQKL+ +L D Y
Sbjct: 85 PILGPCKVTSIDYKEAVINIIHLL---PFPCPLQKLMVDSLPPDDY 127
>Os01g0114700 Similar to LRK33
Length = 561
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 67/94 (71%), Gaps = 8/94 (8%)
Query: 62 MELSCSGQDTILYHPVLGSCKVTAISYKHAAMSIILLVDSTPHCPLQKLISTNLSTDVYK 121
M+LSCSG DTIL HPVLGSCKVTAI Y++ ++ ILLV+S+ +CPLQKL STN+ST VY+
Sbjct: 1 MQLSCSGHDTILDHPVLGSCKVTAIYYRYRVINAILLVESSSNCPLQKLASTNVSTAVYE 60
Query: 122 PQKLEAASLPDCKVVSNGIQAPSTFKETENGVIG 155
PQK + A++ C + + ++G++G
Sbjct: 61 PQKKDGATIVGC--------SKDSIATNQDGIVG 86
>Os01g0117500 Similar to LRK14
Length = 641
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 71/103 (68%), Gaps = 9/103 (8%)
Query: 17 AATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSP---SCGTPLMELSCSGQDTIL 73
AA+AW+ + FF++ CPP++CS+HGP+VRFP +L S + SCG P M+LSCSGQDTIL
Sbjct: 27 AASAWEDKDFFSY--CPPSRCSEHGPEVRFPFQLESNNTTQSSCGLPFMKLSCSGQDTIL 84
Query: 74 YHPVLGS-CKVTAISYKHAAMSIILLVD---STPHCPLQKLIS 112
+ LG KVTAI YKH ++ + L D S+ CPL K IS
Sbjct: 85 DNKCLGRPYKVTAIDYKHPVLTAVPLADEGNSSSPCPLLKSIS 127
>Os01g0117100 Similar to LRK14
Length = 663
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 10/104 (9%)
Query: 17 AATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRLASQSP--SCGTPLMELSCSGQDTILY 74
+ +AW+ + FF++ CPP++C +HGP++RFP +L S++ SCG P M+LSCSGQ TIL+
Sbjct: 23 SVSAWEDKDFFSY--CPPSRCGEHGPEIRFPFKLESKNTPSSCGVPCMKLSCSGQYTILH 80
Query: 75 HPVLGS-CKVTAISYKHAAMSIILLVDSTPH-----CPLQKLIS 112
+ LG K+TAI YKHA ++ + L D + CPL K IS
Sbjct: 81 NKYLGRPYKLTAIDYKHALLTAVPLADEDNYSSPSPCPLLKSIS 124
>Os01g0117300 Protein kinase-like domain containing protein
Length = 487
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 14/105 (13%)
Query: 18 ATAWDAESFFNFKSCPPNQCSKHGPKVRFPLRL--ASQSPSCGTPLMELSCSG-QDTIL- 73
A+AW + FF+ +CP QC K ++R+P R ++ S SCG P M+L+CS Q+TIL
Sbjct: 18 ASAWKDKDFFS--ACPAKQCGK--VEIRYPFRFEPSNTSSSCGLPCMKLTCSDRQETILD 73
Query: 74 YHPVLGS-CKVTAISYKHAAMSIILLVDS-----TPHCPLQKLIS 112
LG KVTAI YK A ++I+ L D TP CPL LIS
Sbjct: 74 IKNYLGRPYKVTAIDYKRATLTIVPLADDSSLPPTPGCPLPNLIS 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,027,399
Number of extensions: 223058
Number of successful extensions: 504
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 11
Length of query: 176
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 82
Effective length of database: 12,127,685
Effective search space: 994470170
Effective search space used: 994470170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)