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Os01g0115900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.41 (0.0311) R2 : 0.493
β1 : 2.08 (0.114) R2dD : 0.385 R2D : 0.313
β2 : 0.732 (0.0802) R2dC : 0.0929 R2C : 0.0869
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.487 (0.0664) R2dN8 : 0.08 R2N8 : 0.00712
σ : 0.585
deviance : 156.01
__
_____
C
peak time of C : 4.61
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.4 0.555 9.4 1.91 0.78 1.02 -0.176 -0.51 0.515 6.09 81.07 1003 -- --
139.65 0.55 9.4 1.95 0.762 0.964 -0.148 -- 0.514 6.04 82 1020 -- --
139.45 0.55 9.4 1.91 0.766 1.01 -- -0.467 0.517 6.04 80.77 1018 -- --
139.69 0.55 9.4 1.95 0.761 0.96 -- -- 0.517 6.01 81.83 1020 -- --
163.13 0.595 9.42 1.97 -- 1.03 -- -0.445 0.531 -- 83.48 1208 -- --
155.99 0.586 9.41 2.08 0.731 -- 0.0756 -- 0.487 4.59 -- -- -- --
156.01 0.585 9.41 2.08 0.732 -- -- -- 0.487 4.61 -- -- -- --
163.05 0.595 9.42 1.98 -- 0.953 -- -- 0.511 -- 85.59 1220 -- --
234.99 0.714 9.44 -- 0.768 1.31 -- -- 0.347 6.19 78 1070 -- --
184.51 0.635 9.42 2.11 -- -- -- -- 0.506 -- -- -- -- --
270.04 0.769 9.46 -- 0.77 -- -- -- 0.255 4.54 -- -- -- --
259.87 0.751 9.45 -- -- 1.29 -- -- 0.352 -- 78.75 1202 -- --
301.74 0.811 9.47 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.91 humidity 80 720 < th dose dependent sin 10 NA
2 138.95 wind 3 14400 > th dose dependent rect. 1 3
4 139.08 humidity 50 270 > th dose dependent rect. 15 11
5 139.09 wind 3 1440 > th dose independent rect. 6 9
6 139.23 wind 3 1440 > th dose independent rect. 7 3
7 139.29 humidity 50 720 > th dose dependent rect. 7 18
10 139.37 wind 3 1440 > th dose independent sin 2 NA
12 139.41 wind 3 1440 < th dose independent rect. 6 9
14 139.44 humidity 50 720 > th dose independent rect. 16 17
17 139.49 humidity 90 14400 > th dose independent rect. 15 1
19 139.51 wind 3 1440 < th dose independent sin 2 NA
22 139.56 humidity 90 14400 > th dose dependent rect. 14 2
25 139.62 humidity 90 14400 > th dose independent rect. 13 3
33 139.69 humidity 80 720 < th dose dependent rect. 16 20
34 139.70 humidity 70 14400 > th dose independent rect. 11 1
36 139.71 humidity 70 14400 < th dose independent rect. 11 1
38 139.72 wind 3 1440 < th dose independent rect. 7 3
39 139.72 wind 3 1440 > th dose independent rect. 4 15
41 139.75 temperature 20 270 > th dose independent rect. 6 17
44 139.77 wind 3 1440 > th dose independent rect. 6 13
46 139.78 wind 1 43200 < th dose independent rect. 13 17
50 139.79 wind 3 1440 > th dose independent rect. 24 19
52 139.80 wind 3 1440 < th dose independent rect. 4 15
65 139.92 wind 3 1440 > th dose independent rect. 2 17
66 139.93 wind 3 1440 < th dose independent rect. 24 19
73 139.98 wind 9 14400 < th dose dependent rect. 2 2
76 140.00 wind 3 43200 < th dose independent rect. 22 1
79 140.01 wind 3 1440 < th dose independent rect. 2 17
93 140.09 humidity 90 14400 < th dose independent rect. 11 5
101 140.11 humidity 80 1440 < th dose independent rect. 23 13
110 140.16 wind 9 14400 < th dose independent rect. 21 14
115 140.17 humidity 50 720 > th dose dependent rect. 7 12
133 140.24 wind 1 43200 > th dose independent rect. 14 16
144 140.28 wind 9 14400 > th dose independent rect. 21 14
169 140.39 wind 3 1440 < th dose independent rect. 2 13
189 140.52 wind 9 14400 < th dose independent rect. 4 7
196 140.55 humidity 70 1440 < th dose independent rect. 11 1
199 140.56 humidity 80 14400 < th dose independent rect. 9 1
218 140.64 wind 9 14400 > th dose independent rect. 5 6
233 140.68 humidity 70 10 > th dose dependent rect. 18 10
238 140.70 wind 7 1440 < th dose dependent rect. 7 3
242 140.73 wind 1 1440 > th dose dependent rect. 7 3
247 140.75 wind 3 14400 > th dose independent rect. 1 4
250 140.76 wind 3 43200 > th dose independent rect. 22 1
253 140.76 humidity 70 1440 < th dose independent rect. 9 6
255 140.76 wind 1 1440 > th dose dependent rect. 8 1
262 140.79 wind 9 1440 < th dose dependent rect. 8 1
264 140.80 wind 3 14400 > th dose independent rect. 4 1
273 140.84 wind 1 43200 < th dose independent rect. 18 18
276 140.86 wind 5 1440 < th dose dependent rect. 6 9
280 140.87 wind 1 43200 < th dose dependent rect. 12 20
285 140.90 humidity 80 1440 > th dose independent rect. 23 13
286 140.90 humidity 80 1440 > th dose dependent rect. 6 2
287 140.90 humidity 50 720 > th dose dependent rect. 15 4
290 140.91 wind 1 43200 < th dose independent rect. 19 16
299 140.94 wind 1 43200 < th dose dependent rect. 12 22
319 141.03 humidity 90 14400 < th dose independent rect. 15 1
320 141.03 wind 9 14400 < th dose independent rect. 1 10
336 141.08 wind 3 14400 < th dose independent rect. 2 3
344 141.09 wind 5 1440 < th dose dependent sin 2 NA
345 141.09 humidity 50 720 > th dose dependent rect. 15 19
368 141.14 humidity 50 720 > th dose dependent rect. 21 22
370 141.15 wind 3 14400 < th dose independent rect. 4 1
378 141.16 wind 9 43200 > th dose independent rect. 18 1
388 141.18 humidity 70 720 > th dose independent rect. 7 12
419 141.25 wind 5 1440 < th dose dependent rect. 4 14
420 141.25 wind 1 43200 < th dose dependent rect. 15 19
425 141.27 humidity 70 720 > th dose independent rect. 7 19
433 141.29 humidity 90 1440 < th dose dependent rect. 5 3
445 141.32 wind 1 43200 > th dose independent rect. 17 17
449 141.32 wind 5 1440 < th dose dependent rect. 6 12
462 141.35 humidity 70 720 > th dose independent rect. 7 17
482 141.38 humidity 80 720 < th dose dependent rect. 16 16
483 141.38 wind 1 43200 < th dose dependent rect. 2 22
486 141.39 humidity 60 1440 > th dose dependent rect. 9 3
510 141.43 wind 1 43200 > th dose independent rect. 19 15
534 141.47 humidity 80 1440 < th dose independent sin 5 NA
543 141.48 wind 1 43200 > th dose independent sin 11 NA
548 141.48 wind 1 43200 < th dose dependent rect. 22 21
558 141.50 wind 5 1440 < th dose dependent rect. 2 16
563 141.51 wind 1 43200 < th dose dependent rect. 22 15
571 141.52 humidity 60 30 > th dose dependent sin 14 NA
620 141.61 humidity 50 720 > th dose dependent sin 20 NA
623 141.61 wind 1 43200 < th dose dependent rect. 22 23
624 141.62 humidity 70 1440 > th dose independent rect. 9 6
654 141.67 humidity 80 720 < th dose dependent rect. 9 23
675 141.71 radiation 10 1440 > th dose independent rect. 10 1
689 141.72 wind 1 43200 < th dose dependent rect. 18 20
709 141.74 humidity 80 1440 < th dose dependent rect. 21 15
718 141.76 radiation 20 1440 > th dose independent rect. 6 9
735 141.76 temperature 25 14400 > th dose dependent rect. 2 1
741 141.76 wind 9 14400 > th dose dependent rect. 21 16
783 141.81 humidity 70 720 < th dose independent rect. 9 22
796 141.83 humidity 70 720 < th dose independent rect. 9 11
812 141.83 radiation 1 720 > th dose dependent rect. 18 11
842 141.87 humidity 90 14400 > th dose dependent rect. 6 12
849 141.89 wind 1 43200 < th dose independent sin 12 NA
857 141.90 wind 3 43200 < th dose independent rect. 22 6
868 141.91 wind 9 43200 < th dose independent rect. 18 1
869 141.91 humidity 60 270 > th dose independent rect. 15 11
872 141.91 wind 1 43200 < th dose dependent sin 6 NA
885 141.92 wind 9 43200 > th dose dependent rect. 16 1
921 141.96 humidity 80 720 < th dose dependent no NA NA
930 141.97 humidity 70 720 < th dose independent rect. 14 22
933 141.98 wind 9 43200 > th dose dependent rect. 18 2
954 142.00 humidity 80 720 < th dose dependent rect. 5 23
962 142.02 humidity 90 1440 < th dose independent rect. 5 3
989 142.04 humidity 70 720 > th dose independent rect. 14 5