Os01g0113200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LRK14.
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Os01g0113200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LRK14.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.54 | 0.437 | 3.05 | -0.136 | 1.22 | 1.81 | -3.66 | -5.68 | 0.0397 | 19.3 | 2.632 | 837 | -- | -- |
| 93.33 | 0.45 | 3.11 | -0.291 | 1.71 | 2.41 | 0.162 | -- | -0.03 | 19.1 | 1.53 | 825 | -- | -- |
| 92.29 | 0.447 | 3.08 | -0.191 | 1.61 | 2.37 | -- | -1.05 | -0.0194 | 19 | 1.561 | 818 | -- | -- |
| 93.03 | 0.449 | 3.09 | -0.231 | 1.61 | 2.34 | -- | -- | -0.0153 | 19.1 | 1.429 | 828 | -- | -- |
| 93.7 | 0.451 | 2.99 | 0.0795 | -- | 1 | -- | -1.9 | 0.215 | -- | 3.179 | 1549 | -- | -- |
| 100.79 | 0.471 | 3.07 | -0.451 | 0.234 | -- | -0.756 | -- | -0.117 | 1.76 | -- | -- | -- | -- |
| 103.03 | 0.475 | 3.07 | -0.427 | 0.235 | -- | -- | -- | -0.113 | 1.9 | -- | -- | -- | -- |
| 96.52 | 0.458 | 3.03 | -0.28 | -- | 0.875 | -- | -- | 0.0228 | -- | 2.408 | 1520 | -- | -- |
| 94.01 | 0.452 | 3.08 | -- | 1.68 | 2.48 | -- | -- | 0.0246 | 19.4 | 1.091 | 869 | -- | -- |
| 106.37 | 0.482 | 3.07 | -0.417 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 107.84 | 0.486 | 3.06 | -- | 0.227 | -- | -- | -- | -0.0653 | 1.85 | -- | -- | -- | -- |
| 98.15 | 0.461 | 3.03 | -- | -- | 1.01 | -- | -- | 0.0478 | -- | 2.1 | 1519 | -- | -- |
| 110.96 | 0.492 | 3.05 | -- | -- | -- | -- | -- | -0.0612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 2 | 78.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 9 | 79.93 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 1 |
| 10 | 79.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 11 | 80.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 12 | 80.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 13 | 80.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 16 | 80.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 23 | 80.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 31 | 80.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 35 | 80.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 96 | 82.66 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 110 | 83.00 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 131 | 83.34 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 152 | 83.88 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 153 | 83.89 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 164 | 83.90 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 184 | 84.03 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 194 | 84.23 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 195 | 84.24 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 204 | 84.35 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 205 | 84.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 212 | 84.40 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 332 | 85.25 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 12 |
| 403 | 85.78 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 406 | 85.80 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 449 | 86.13 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 468 | 86.28 | radiation | 10 | 720 | < th | dose dependent | sin | 17 | NA |
| 479 | 86.32 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 575 | 86.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 596 | 86.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 656 | 87.11 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 657 | 87.11 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 735 | 87.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 740 | 87.35 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 742 | 87.35 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 744 | 87.35 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 817 | 87.35 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 819 | 87.35 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 821 | 87.35 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 936 | 87.45 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |