Os01g0113800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0113800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 417.95 | 0.961 | 4.81 | -0.587 | 2.04 | -0.989 | 0.699 | -0.522 | 1.19 | 1.03 | 56.92 | 1429 | -- | -- |
| 418.36 | 0.953 | 4.8 | -0.566 | 2.04 | -1.04 | 0.685 | -- | 1.19 | 1.03 | 56.87 | 1421 | -- | -- |
| 419.98 | 0.954 | 4.81 | -0.612 | 2.04 | -0.98 | -- | -0.463 | 1.19 | 1.04 | 56.46 | 1430 | -- | -- |
| 420.29 | 0.955 | 4.8 | -0.59 | 2.04 | -1.02 | -- | -- | 1.19 | 1.04 | 56.92 | 1423 | -- | -- |
| 635.93 | 1.18 | 4.75 | -0.705 | -- | -1.36 | -- | -0.818 | 1.31 | -- | 57 | 1755 | -- | -- |
| 454.15 | 0.999 | 4.75 | -0.78 | 1.96 | -- | 0.513 | -- | 1.4 | 0.981 | -- | -- | -- | -- |
| 455.25 | 0.999 | 4.75 | -0.799 | 1.96 | -- | -- | -- | 1.4 | 0.995 | -- | -- | -- | -- |
| 492.53 | 1.04 | 4.72 | -0.612 | -- | -1.41 | -- | -- | 1.45 | -- | 74 | 1652 | -- | -- |
| 429.17 | 0.965 | 4.79 | -- | 2.04 | -1.12 | -- | -- | 1.23 | 1.04 | 56.42 | 1413 | -- | -- |
| 693.42 | 1.23 | 4.72 | -0.725 | -- | -- | -- | -- | 1.44 | -- | -- | -- | -- | -- |
| 472.07 | 1.02 | 4.73 | -- | 1.94 | -- | -- | -- | 1.49 | 0.978 | -- | -- | -- | -- |
| 502.41 | 1.05 | 4.7 | -- | -- | -1.42 | -- | -- | 1.52 | -- | 74 | 1652 | -- | -- |
| 707.3 | 1.24 | 4.7 | -- | -- | -- | -- | -- | 1.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 403.11 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 4 | 404.20 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 15 |
| 7 | 406.10 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 16 | 406.23 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 17 | 406.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 18 | 406.67 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 43 | 407.18 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 96 | 407.71 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 17 | NA |
| 97 | 407.71 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 114 | 407.85 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 138 | 408.13 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 182 | 408.47 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 265 | 408.95 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 274 | 409.01 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 11 | 15 |
| 284 | 409.04 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 289 | 409.05 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 316 | 409.13 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 320 | 409.14 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 327 | 409.16 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 337 | 409.19 | atmosphere | 1000 | 14400 | < th | dose dependent | no | NA | NA |
| 366 | 409.26 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 369 | 409.27 | atmosphere | 1000 | 14400 | < th | dose independent | sin | 18 | NA |
| 373 | 409.28 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 388 | 409.32 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 409 | 409.36 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 17 | 23 |
| 428 | 409.41 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 439 | 409.45 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 443 | 409.46 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 456 | 409.48 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 11 | 16 |
| 494 | 409.59 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 600 | 409.81 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 612 | 409.84 | atmosphere | 1000 | 14400 | > th | dose independent | sin | 17 | NA |
| 742 | 410.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 800 | 410.22 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 838 | 410.30 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 855 | 410.34 | atmosphere | 1000 | 14400 | < th | dose independent | no | NA | NA |
| 882 | 410.39 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 22 | 23 |