Os01g0116300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0116300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.94 | 0.497 | 3.18 | 0.299 | 0.0989 | -0.331 | 0.837 | -1.35 | 0.09 | 0.0569 | 58 | 2134 | -- | -- |
| 113.95 | 0.497 | 3.17 | 0.406 | 0.0917 | -0.467 | 1.03 | -- | 0.1 | 0.642 | 53 | 2265 | -- | -- |
| 114.91 | 0.499 | 3.18 | 0.267 | 0.105 | -0.316 | -- | -1.2 | 0.086 | 0.342 | 58 | 2118 | -- | -- |
| 115.91 | 0.501 | 3.16 | 0.268 | 0.101 | -0.397 | -- | -- | 0.0812 | 0.207 | 61.03 | 1057 | -- | -- |
| 115.42 | 0.5 | 3.17 | 0.267 | -- | -0.273 | -- | -1.07 | 0.0965 | -- | 58 | 2054 | -- | -- |
| 118.44 | 0.51 | 3.14 | 0.263 | 0.066 | -- | 0.723 | -- | 0.161 | 1.05 | -- | -- | -- | -- |
| 120.53 | 0.514 | 3.14 | 0.236 | 0.078 | -- | -- | -- | 0.157 | 3.12 | -- | -- | -- | -- |
| 116.87 | 0.503 | 3.16 | 0.294 | -- | -0.35 | -- | -- | 0.0904 | -- | 61.04 | 1059 | -- | -- |
| 118.25 | 0.506 | 3.17 | -- | 0.128 | -0.359 | -- | -- | 0.0549 | 0.0478 | 62.04 | 1046 | -- | -- |
| 120.88 | 0.514 | 3.14 | 0.239 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 122 | 0.517 | 3.15 | -- | 0.0827 | -- | -- | -- | 0.131 | 3.13 | -- | -- | -- | -- |
| 119.25 | 0.509 | 3.16 | -- | -- | -0.314 | -- | -- | 0.0625 | -- | 61.39 | 1048 | -- | -- |
| 122.39 | 0.516 | 3.15 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.99 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 2 | 108.25 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 3 | 108.27 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 6 | 108.46 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 13 | 108.52 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 14 | 108.52 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 20 | 108.59 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 21 | 108.59 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 131 | 108.74 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 166 | 108.82 | atmosphere | 1000 | 14400 | > th | dose independent | sin | 4 | NA |
| 167 | 108.82 | atmosphere | 1000 | 14400 | < th | dose independent | sin | 4 | NA |
| 348 | 109.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 468 | 109.10 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 572 | 109.16 | atmosphere | 1000 | 14400 | < th | dose independent | no | NA | NA |
| 604 | 109.18 | atmosphere | 1000 | 14400 | > th | dose independent | no | NA | NA |
| 641 | 109.19 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 772 | 109.27 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 3 | NA |
| 820 | 109.30 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 863 | 109.33 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 879 | 109.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |