Os01g0114500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LRK14.
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Os01g0114500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LRK14.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.04 | 0.574 | 4.6 | 0.65 | 0.362 | -1.42 | -0.753 | -3.01 | 0.609 | 12.2 | 1007 | 9852 | -- | -- |
| 168.73 | 0.605 | 4.71 | -0.214 | 0.33 | -1.38 | -0.694 | -- | 0.378 | 11.4 | 1007 | 10374 | -- | -- |
| 151.23 | 0.573 | 4.6 | 0.619 | 0.373 | -1.44 | -- | -3.05 | 0.609 | 11.6 | 1007 | 9711 | -- | -- |
| 170.48 | 0.608 | 4.71 | -0.281 | 0.34 | -1.38 | -- | -- | 0.38 | 11.2 | 1007 | 10368 | -- | -- |
| 159.74 | 0.589 | 4.62 | 0.578 | -- | -1.41 | -- | -2.88 | 0.592 | -- | 1007 | 10024 | -- | -- |
| 235.79 | 0.72 | 4.64 | 0.232 | 0.311 | -- | -0.87 | -- | 0.663 | 12.1 | -- | -- | -- | -- |
| 238.36 | 0.723 | 4.64 | 0.194 | 0.335 | -- | -- | -- | 0.656 | 10.7 | -- | -- | -- | -- |
| 177.81 | 0.621 | 4.71 | -0.289 | -- | -1.39 | -- | -- | 0.382 | -- | 1007 | 10354 | -- | -- |
| 172.39 | 0.612 | 4.7 | -- | 0.345 | -1.33 | -- | -- | 0.427 | 11.3 | 1007 | 10401 | -- | -- |
| 245.29 | 0.732 | 4.65 | 0.187 | -- | -- | -- | -- | 0.654 | -- | -- | -- | -- | -- |
| 239.35 | 0.724 | 4.65 | -- | 0.333 | -- | -- | -- | 0.635 | 10.7 | -- | -- | -- | -- |
| 179.81 | 0.625 | 4.7 | -- | -- | -1.33 | -- | -- | 0.427 | -- | 1007 | 10410 | -- | -- |
| 246.21 | 0.732 | 4.66 | -- | -- | -- | -- | -- | 0.634 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.67 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 2 | 154.56 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 3 | 154.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 4 | 154.82 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 8 | 154.85 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 12 | 154.89 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 15 | 154.95 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 16 | 154.96 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 21 | 154.97 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 26 | 155.04 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 34 | 155.24 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 52 | 155.51 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 79 | 155.85 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 80 | 155.87 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 82 | 155.89 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 83 | 155.90 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 91 | 156.05 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 98 | 156.10 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 114 | 156.18 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 141 | 156.41 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 8 | 4 |
| 158 | 156.57 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 182 | 156.74 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 263 | 157.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 270 | 157.29 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 292 | 157.42 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 523 | 158.15 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 529 | 158.18 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 540 | 158.21 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 565 | 158.27 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 625 | 158.41 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 672 | 158.52 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 15 | 21 |
| 697 | 158.58 | atmosphere | 1010.0 | 14400 | > th | dose dependent | no | NA | NA |
| 744 | 158.63 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 752 | 158.65 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 769 | 158.67 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 781 | 158.70 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 14 | NA |
| 812 | 158.76 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 865 | 158.85 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 870 | 158.86 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 871 | 158.86 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 887 | 158.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 892 | 158.89 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 20 |
| 935 | 158.98 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 977 | 159.07 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 15 |
| 993 | 159.09 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 11 |
| 1000 | 159.10 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 9 |