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Os01g0115600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LRK14.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.92 (0.113) R2 : 0.792
β1 : 5.41 (0.814) R2dD : 0.258 R2D : 0.419
β2 : 1.17 (0.152) R2dC : 0.0274 R2C : 0.0126
β3 : 0.722 (0.436) R2dE : 0.00821 R2E : -0.0203
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.8 (3.59) R2dD*E : 0.123 R2D*E : 0.298
γ1 : 2.84 (0.171) R2dN8 : 0.271 R2N8 : 0.135
σ : 1.18
deviance : 646.35
__
_____
C
peak time of C : 1.01
E
wheather : temperature
threshold : 28.16
memory length : 1480
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
645.85 1.19 7.91 5.5 1.17 0.633 0.412 -13.9 2.84 0.956 28.01 1453 -- --
697.03 1.24 7.49 8.56 0.799 -1.08 0.218 -- 3.49 0.0849 14.33 45783 -- --
646.35 1.18 7.92 5.41 1.17 0.722 -- -14.8 2.84 1.01 28.16 1480 -- --
696.33 1.23 7.49 8.56 0.814 -1.11 -- -- 3.49 0.0105 9.557 50 -- --
730.04 1.26 7.87 5.72 -- 0.735 -- -14.5 2.91 -- 28.13 1550 -- --
708.03 1.25 7.53 8.35 1.07 -- 0.216 -- 3.34 0.707 -- -- -- --
708.22 1.25 7.53 8.34 1.07 -- -- -- 3.34 0.746 -- -- -- --
723.92 1.26 7.45 8.68 -- -1.57 -- -- 3.61 -- 19.6 17 -- --
1161.11 1.59 8.14 -- 0.966 5.98 -- -- 0.62 0.776 -176.6 47520 -- --
779.82 1.3 7.51 8.38 -- -- -- -- 3.36 -- -- -- -- --
2541.79 2.36 7.74 -- 1.2 -- -- -- 2.41 1.07 -- -- -- --
1219.34 1.63 8.13 -- -- 6.04 -- -- 0.617 -- -174.5 47520 -- --
2631.97 2.39 7.72 -- -- -- -- -- 2.43 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 631.70 atmosphere 995.0 43200 < th dose dependent rect. 15 11
2 632.36 atmosphere 995.0 43200 < th dose independent rect. 18 6
3 632.53 atmosphere 995.0 43200 > th dose independent rect. 18 6
5 633.67 humidity 50.0 14400 > th dose independent rect. 16 19
6 633.80 atmosphere 995.0 43200 < th dose dependent rect. 16 9
8 633.93 wind 7.0 43200 < th dose independent rect. 18 6
11 634.57 humidity 50.0 14400 < th dose independent rect. 15 20
12 634.62 atmosphere 995.0 43200 > th dose independent sin 12 NA
13 634.72 humidity 50.0 14400 < th dose independent sin 11 NA
14 634.77 atmosphere 995.0 43200 < th dose independent sin 12 NA
15 634.88 atmosphere 995.0 43200 < th dose dependent rect. 17 7
18 635.42 humidity 60.0 14400 < th dose dependent rect. 16 18
20 635.70 atmosphere 995.0 43200 < th dose independent rect. 17 12
21 635.72 atmosphere 995.0 43200 > th dose independent rect. 17 13
24 635.93 wind 7.0 43200 > th dose independent rect. 18 4
33 636.25 atmosphere 995.0 43200 < th dose dependent rect. 18 4
34 636.30 humidity 50.0 14400 < th dose independent rect. 15 3
55 636.93 wind 9.0 43200 > th dose dependent rect. 15 16
57 637.25 wind 7.0 43200 < th dose independent rect. 18 9
70 638.13 wind 9.0 43200 > th dose independent rect. 16 16
76 638.48 radiation 20.0 1440 > th dose dependent rect. 16 1
93 638.60 wind 9.0 43200 < th dose independent rect. 16 16
95 638.72 wind 9.0 43200 > th dose dependent rect. 15 7
96 638.74 humidity 50.0 14400 > th dose independent sin 11 NA
100 638.93 wind 9.0 43200 > th dose dependent rect. 15 9
101 638.95 humidity 50.0 14400 > th dose independent rect. 15 8
103 638.97 humidity 50.0 14400 > th dose independent rect. 15 6
107 639.01 humidity 50.0 14400 > th dose independent rect. 15 12
108 639.02 humidity 50.0 14400 > th dose independent rect. 15 14
123 639.61 wind 7.0 43200 > th dose independent rect. 18 9
126 639.81 radiation 10.0 43200 < th dose dependent rect. 7 3
128 639.98 precipitation 0.1 43200 > th dose dependent rect. 16 2
132 640.26 wind 9.0 43200 > th dose independent rect. 16 13
146 640.72 humidity 60.0 14400 < th dose dependent rect. 16 2
155 640.96 wind 9.0 43200 > th dose independent rect. 17 1
156 640.98 wind 7.0 43200 > th dose dependent rect. 17 7
163 641.30 humidity 60.0 14400 < th dose independent rect. 17 16
166 641.37 wind 7.0 43200 > th dose dependent rect. 17 12
187 641.69 wind 9.0 43200 < th dose independent rect. 16 8
194 642.00 wind 1.0 43200 < th dose dependent rect. 19 2
197 642.05 wind 9.0 43200 < th dose independent rect. 17 1
201 642.15 wind 9.0 43200 > th dose dependent rect. 15 3
210 642.45 wind 9.0 43200 > th dose independent rect. 16 8
220 642.73 wind 1.0 14400 < th dose dependent rect. 1 2
223 642.79 precipitation 0.1 43200 > th dose dependent rect. 17 4
239 643.10 humidity 60.0 14400 > th dose independent rect. 17 16
240 643.18 humidity 60.0 14400 > th dose independent rect. 17 2
263 643.66 wind 7.0 43200 > th dose independent rect. 19 1
277 644.05 humidity 60.0 14400 < th dose independent rect. 17 1
280 644.10 radiation 20.0 43200 < th dose dependent rect. 9 1
305 644.55 humidity 60.0 14400 > th dose independent rect. 17 6
308 644.58 humidity 60.0 14400 > th dose independent rect. 17 10
310 644.59 humidity 60.0 14400 > th dose independent rect. 17 8
311 644.59 humidity 60.0 14400 > th dose independent rect. 17 12
324 644.76 humidity 60.0 14400 > th dose independent rect. 17 14
327 644.78 temperature 25.0 4320 < th dose independent rect. 6 1
329 644.85 precipitation 0.1 43200 > th dose dependent rect. 20 1
356 645.22 temperature 25.0 1440 > th dose dependent rect. 6 2
365 645.43 radiation 20.0 1440 > th dose independent rect. 16 1
408 645.65 wind 7.0 43200 > th dose dependent sin 12 NA
412 645.70 wind 9.0 43200 < th dose independent sin 12 NA
414 645.74 wind 9.0 43200 > th dose independent sin 12 NA
438 645.87 radiation 20.0 1440 < th dose independent rect. 16 1
441 645.88 temperature 25.0 4320 > th dose independent rect. 6 1
445 645.90 radiation 20.0 1440 < th dose independent rect. 16 6
468 646.19 radiation 20.0 1440 < th dose independent rect. 16 13
472 646.20 radiation 20.0 1440 < th dose independent rect. 16 11
520 646.93 radiation 40.0 43200 > th dose independent rect. 14 1
533 647.17 temperature 25.0 4320 > th dose dependent rect. 19 2
538 647.25 wind 1.0 1440 > th dose independent rect. 4 1
563 647.64 humidity 60.0 14400 < th dose dependent sin 11 NA
603 648.13 wind 9.0 43200 > th dose dependent rect. 20 2
638 648.55 temperature 30.0 1440 < th dose independent rect. 18 21
657 648.81 radiation 30.0 1440 < th dose independent rect. 15 20
664 648.86 temperature 25.0 4320 < th dose independent rect. 5 3
733 649.66 atmosphere 1000.0 14400 > th dose independent rect. 16 1
737 649.72 wind 7.0 43200 > th dose independent rect. 13 1
746 649.82 wind 1.0 4320 < th dose dependent rect. 9 2
752 649.90 temperature 30.0 1440 < th dose independent rect. 9 6
756 649.96 wind 9.0 43200 > th dose dependent rect. 11 11
758 649.98 wind 1.0 43200 > th dose independent rect. 22 1
768 650.07 temperature 30.0 1440 < th dose independent rect. 1 14
769 650.08 temperature 30.0 1440 < th dose independent rect. 3 12
778 650.12 precipitation 0.1 43200 < th dose independent rect. 16 2
779 650.12 precipitation 0.1 43200 < th dose dependent rect. 16 2
781 650.13 temperature 30.0 1440 < th dose independent rect. 22 17
790 650.19 precipitation 0.1 43200 > th dose independent rect. 16 2
798 650.25 wind 1.0 43200 < th dose dependent rect. 5 1
818 650.37 wind 7.0 43200 > th dose dependent rect. 12 2
824 650.43 radiation 30.0 1440 > th dose independent rect. 15 20
830 650.46 temperature 30.0 1440 > th dose independent rect. 18 21
857 650.77 atmosphere 995.0 43200 < th dose dependent sin 14 NA
874 650.95 wind 1.0 1440 < th dose independent rect. 4 1
875 650.95 atmosphere 1005.0 43200 < th dose dependent rect. 5 1
901 651.07 temperature 30.0 1440 < th dose independent rect. 13 23
909 651.15 radiation 30.0 1440 < th dose independent rect. 10 1
918 651.26 temperature 30.0 1440 < th dose independent rect. 9 20
919 651.27 temperature 30.0 1440 < th dose independent rect. 9 15
920 651.28 temperature 30.0 1440 < th dose independent rect. 9 12
926 651.32 temperature 30.0 1440 < th dose independent rect. 9 17
928 651.33 temperature 30.0 1440 < th dose independent sin 2 NA
950 651.38 temperature 25.0 1440 > th dose dependent rect. 17 18
953 651.39 temperature 30.0 1440 < th dose independent rect. 1 23
956 651.40 temperature 30.0 1440 < th dose independent rect. 3 21
959 651.41 temperature 30.0 1440 < th dose independent rect. 3 18
960 651.41 temperature 30.0 1440 < th dose independent rect. 1 20
996 651.44 temperature 30.0 1440 < th dose independent rect. 22 23