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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0117300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.99 (0.0524) R2 : 0.779
β1 : 7.12 (0.222) R2dD : 0.892 R2D : 0.377
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.03 (0.36) R2dE : 0.0749 R2E : -0.304
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.29 (0.73) R2dD*E : 0.038 R2D*E : 0.0168
γ1 : 2.17 (0.114) R2dN8 : 0.333 R2N8 : 0.0557
σ : 0.843
deviance : 327.35
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_____
C
peak time of C : --
E
wheather : wind
threshold : 2.66
memory length : 23647
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 1.26

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
315.31 0.834 5.98 7.03 0.457 2.82 1.18 4.91 2.16 22.4 2.83 22786 17.2 1.16
358.12 0.881 5.9 7.04 0.432 3.2 1.21 -- 2.18 22 2.599 24165 17.3 1.47
320.93 0.834 5.98 7.03 0.46 2.83 -- 4.89 2.16 22.4 2.831 22772 17.2 1.13
353.3 0.875 5.88 7.12 0.385 3.27 -- -- 2.18 21.7 2.311 22767 17.3 1.47
327.35 0.843 5.99 7.12 -- 3.03 -- 5.29 2.17 -- 2.66 23647 17.2 1.26
431.56 0.974 5.89 5.82 0.53 -- 1.11 -- 1.99 23.4 -- -- -- --
436.79 0.979 5.9 5.77 0.525 -- -- -- 1.98 23.6 -- -- -- --
360.79 0.885 5.88 7.13 -- 3.66 -- -- 2.18 -- 2.132 23491 17.2 1.8
544.76 1.09 6.02 -- 0.722 -5.27 -- -- 0.691 22.7 -0.1764 38967 21.8 1.7
454.1 0.996 5.88 5.78 -- -- -- -- 1.99 -- -- -- -- --
1314.04 1.7 6.04 -- 0.599 -- -- -- 1.34 0.236 -- -- -- --
539.26 1.08 6.25 -- -- -5.39 -- -- 0.367 -- -5.936 47520 21.8 1.67
1336.59 1.71 6.03 -- -- -- -- -- 1.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.23 radiation 10.0 43200 > th dose independent rect. 16 2
15 296.87 radiation 20.0 43200 > th dose dependent rect. 15 3
44 298.08 radiation 20.0 43200 > th dose independent rect. 15 16
60 298.52 radiation 40.0 43200 < th dose dependent rect. 15 1
62 298.64 radiation 40.0 43200 < th dose dependent rect. 15 10
64 298.65 radiation 40.0 43200 < th dose dependent rect. 15 7
69 298.66 radiation 40.0 43200 < th dose dependent rect. 15 4
100 299.29 radiation 20.0 43200 < th dose dependent rect. 15 1
131 300.05 humidity 50.0 43200 > th dose independent rect. 10 5
136 300.35 radiation 30.0 43200 > th dose independent rect. 14 18
152 300.51 wind 1.0 43200 > th dose independent rect. 22 1
178 300.78 radiation 10.0 43200 < th dose dependent rect. 17 9
184 300.83 radiation 10.0 43200 < th dose dependent rect. 17 5
186 300.85 radiation 10.0 43200 < th dose dependent rect. 17 2
193 300.99 wind 1.0 43200 < th dose independent rect. 22 1
213 301.24 atmosphere 1010.0 14400 < th dose independent rect. 7 1
232 301.44 radiation 40.0 43200 > th dose dependent rect. 14 18
233 301.45 humidity 50.0 43200 < th dose independent rect. 13 2
252 301.63 humidity 50.0 43200 > th dose independent rect. 13 2
274 301.69 humidity 50.0 43200 < th dose independent rect. 9 6
320 301.78 atmosphere 1010.0 43200 > th dose dependent rect. 23 1
325 301.80 humidity 50.0 43200 > th dose independent rect. 22 17
327 301.81 humidity 50.0 43200 > th dose independent rect. 24 15
330 301.83 humidity 50.0 43200 > th dose independent rect. 2 13
339 301.96 atmosphere 1010.0 43200 > th dose dependent rect. 18 1
353 302.08 atmosphere 1010.0 43200 > th dose dependent rect. 18 6
399 302.32 atmosphere 1010.0 43200 > th dose dependent rect. 13 11
404 302.36 atmosphere 1010.0 14400 > th dose independent rect. 7 2
459 302.59 atmosphere 1010.0 14400 < th dose independent rect. 6 8
480 302.68 atmosphere 1010.0 43200 > th dose dependent sin 16 NA
563 302.90 atmosphere 1010.0 43200 > th dose dependent rect. 13 1
599 303.06 wind 9.0 43200 > th dose dependent rect. 15 2
747 303.61 atmosphere 1010.0 43200 > th dose dependent rect. 15 1
764 303.67 atmosphere 1010.0 14400 > th dose independent rect. 7 7
773 303.70 humidity 80.0 43200 < th dose independent rect. 18 2
775 303.70 precipitation 0.1 43200 > th dose dependent rect. 3 1
816 303.85 atmosphere 1010.0 43200 > th dose dependent rect. 3 21
842 303.88 atmosphere 1010.0 43200 > th dose dependent no NA NA
856 303.91 atmosphere 1010.0 43200 > th dose dependent rect. 15 23
857 303.91 atmosphere 1010.0 43200 > th dose dependent rect. 17 23
862 303.92 atmosphere 1010.0 43200 > th dose dependent rect. 20 23
866 303.94 radiation 10.0 43200 < th dose dependent rect. 15 19
907 304.05 humidity 50.0 43200 > th dose independent sin 3 NA
978 304.26 atmosphere 1010.0 14400 > th dose independent rect. 12 2
992 304.32 radiation 10.0 43200 < th dose dependent rect. 15 17