Os01g0117100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LRK14.
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Os01g0117100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LRK14.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.99 | 0.577 | 9.36 | 2.65 | 0.14 | -0.544 | 0.953 | -4.44 | 1.1 | 23.2 | 18.43 | 3971 | -- | -- |
| 163.03 | 0.595 | 9.51 | 2.45 | 0.123 | 1.02 | 1.26 | -- | 0.997 | 0.16 | 16.4 | 7078 | -- | -- |
| 153.98 | 0.578 | 9.36 | 2.6 | 0.165 | -0.617 | -- | -4.93 | 1.09 | 21.3 | 18.2 | 3725 | -- | -- |
| 166.43 | 0.601 | 9.5 | 2.4 | 0.127 | 1.07 | -- | -- | 1.03 | 23.5 | 14.4 | 10926 | -- | -- |
| 155.57 | 0.581 | 9.37 | 2.62 | -- | -0.604 | -- | -4.91 | 1.1 | -- | 18.3 | 3663 | -- | -- |
| 175.06 | 0.62 | 9.53 | 1.96 | 0.101 | -- | 1.13 | -- | 0.893 | 0.428 | -- | -- | -- | -- |
| 179.63 | 0.628 | 9.54 | 1.92 | 0.163 | -- | -- | -- | 0.891 | 20.8 | -- | -- | -- | -- |
| 167.45 | 0.603 | 9.5 | 2.43 | -- | 1.1 | -- | -- | 1.03 | -- | 14.41 | 10922 | -- | -- |
| 276.24 | 0.778 | 9.59 | -- | 0.171 | -0.583 | -- | -- | 0.673 | 21.8 | 14.4 | 10926 | -- | -- |
| 181.13 | 0.629 | 9.53 | 1.92 | -- | -- | -- | -- | 0.889 | -- | -- | -- | -- | -- |
| 276.91 | 0.778 | 9.59 | -- | 0.163 | -- | -- | -- | 0.677 | 21.7 | -- | -- | -- | -- |
| 172.29 | 0.611 | 9.66 | -- | -- | -1.37 | -- | -- | 0.382 | -- | 33.8 | 47402 | -- | -- |
| 278.48 | 0.779 | 9.58 | -- | -- | -- | -- | -- | 0.676 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.40 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 2 | 136.75 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 4 | 137.02 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 5 | 137.20 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 6 | 137.22 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 8 | 137.30 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 15 | 137.61 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 17 | 137.72 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 23 | 137.82 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 34 | 138.05 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 41 | 138.14 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 68 | 138.52 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 77 | 138.60 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 94 | 138.74 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 96 | 138.75 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 100 | 138.79 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 101 | 138.79 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 108 | 138.89 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 131 | 138.95 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 134 | 138.96 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 135 | 138.98 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 181 | 139.35 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 235 | 139.67 | humidity | 50.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 242 | 139.71 | humidity | 50.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 271 | 139.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 338 | 140.12 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 11 |
| 357 | 140.19 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 433 | 140.55 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 452 | 140.64 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 539 | 140.94 | wind | 9.0 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 575 | 141.07 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 608 | 141.16 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 617 | 141.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 648 | 141.26 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 649 | 141.27 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 721 | 141.38 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 723 | 141.38 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 749 | 141.44 | humidity | 50.0 | 43200 | < th | dose independent | no | NA | NA |
| 777 | 141.46 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 815 | 141.52 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 825 | 141.53 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 827 | 141.53 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 839 | 141.55 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 848 | 141.56 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 851 | 141.56 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 872 | 141.58 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 881 | 141.58 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 9 | 14 |
| 977 | 141.67 | humidity | 50.0 | 43200 | > th | dose independent | no | NA | NA |