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Os01g0117500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LRK14.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.58 (0.0452) R2 : 0.785
β1 : 5.7 (0.166) R2dD : 0.683 R2D : 0.549
β2 : 0.836 (0.109) R2dC : 0.0277 R2C : 0.0223
β3 : 0.363 (0.255) R2dE : 0.00126 R2E : 0.00266
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.29 (0.925) R2dD*E : 0.0456 R2D*E : -0.0121
γ1 : 1.45 (0.0908) R2dN8 : 0.17 R2N8 : 0.0308
σ : 0.778
deviance : 279.27
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C
peak time of C : 5.67
E
wheather : wind
threshold : 6.495
memory length : 1318
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
277.58 0.783 8.58 5.7 0.835 0.356 -0.845 -8.27 1.45 5.74 6.677 1298 -- --
313.55 0.825 8.4 5.36 0.838 1.33 -0.919 -- 1.63 6.18 9.595 2692 -- --
279.27 0.778 8.58 5.7 0.836 0.363 -- -8.29 1.45 5.67 6.495 1318 -- --
315.24 0.827 8.41 5.36 0.841 1.4 -- -- 1.64 5.83 12.72 2687 -- --
311.06 0.821 8.57 5.52 -- 1.06 -- -8.08 1.55 -- 5.245 1830 -- --
329.53 0.851 8.43 5.7 0.846 -- -1.01 -- 1.54 6.42 -- -- -- --
331.83 0.853 8.43 5.69 0.845 -- -- -- 1.54 6.14 -- -- -- --
344.52 0.864 8.45 5.35 -- 1.29 -- -- 1.56 -- 14.07 395 -- --
581.17 1.12 8.74 -- 0.835 5.29 -- -- 0.18 6.26 19.62 47520 -- --
368.88 0.897 8.45 5.71 -- -- -- -- 1.56 -- -- -- -- --
1184.41 1.61 8.57 -- 0.931 -- -- -- 0.905 5.82 -- -- -- --
617.35 1.16 8.75 -- -- 5.32 -- -- 0.191 -- 25.3 47520 -- --
1229.33 1.64 8.59 -- -- -- -- -- 0.923 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.20 wind 1 43200 > th dose independent rect. 18 11
2 262.38 wind 1 43200 < th dose independent rect. 18 11
4 263.93 atmosphere 1005 14400 > th dose independent rect. 15 2
7 264.39 atmosphere 1005 14400 > th dose independent rect. 13 5
8 264.43 atmosphere 1005 14400 < th dose independent rect. 13 5
9 264.47 atmosphere 1005 14400 < th dose independent rect. 15 3
11 264.66 humidity 90 14400 < th dose independent rect. 24 8
17 264.84 atmosphere 1005 14400 < th dose independent rect. 16 1
26 265.08 wind 1 43200 < th dose independent rect. 20 9
29 265.23 radiation 1 14400 < th dose dependent rect. 23 6
32 265.30 wind 1 43200 > th dose independent rect. 20 9
43 265.58 radiation 1 14400 < th dose dependent rect. 19 10
60 265.89 humidity 90 14400 < th dose independent rect. 3 4
88 266.48 humidity 90 14400 > th dose independent rect. 23 2
90 266.53 humidity 90 14400 > th dose independent rect. 4 3
107 266.93 humidity 90 14400 > th dose independent rect. 5 1
112 267.08 atmosphere 1005 14400 < th dose independent rect. 13 1
118 267.14 radiation 20 43200 > th dose dependent rect. 16 1
119 267.15 atmosphere 1005 14400 > th dose independent rect. 13 1
145 267.44 humidity 90 14400 < th dose independent rect. 4 2
151 267.61 humidity 90 14400 > th dose independent rect. 23 8
154 267.66 wind 9 43200 > th dose independent rect. 14 3
165 267.85 atmosphere 1005 14400 > th dose independent sin 20 NA
178 268.07 wind 1 43200 < th dose dependent rect. 17 13
186 268.25 wind 9 43200 < th dose independent rect. 14 3
187 268.25 wind 1 43200 < th dose independent rect. 22 5
190 268.29 humidity 90 14400 > th dose dependent rect. 2 5
210 268.62 wind 1 43200 < th dose dependent rect. 18 11
219 268.73 humidity 80 14400 > th dose independent rect. 21 2
220 268.76 wind 1 43200 < th dose dependent rect. 20 1
225 268.86 atmosphere 1005 14400 < th dose independent sin 19 NA
239 269.01 humidity 90 14400 < th dose independent rect. 23 2
247 269.11 wind 1 43200 < th dose dependent sin 13 NA
254 269.23 wind 9 43200 > th dose dependent rect. 14 3
257 269.26 humidity 90 14400 < th dose independent rect. 22 4
263 269.37 wind 5 14400 > th dose independent rect. 18 1
310 269.76 humidity 90 14400 > th dose dependent rect. 2 1
314 269.82 humidity 90 14400 > th dose independent rect. 22 6
321 269.93 wind 9 43200 > th dose independent rect. 16 1
328 270.01 wind 7 43200 > th dose independent rect. 13 1
346 270.23 atmosphere 1005 43200 > th dose independent sin 14 NA
349 270.25 atmosphere 1005 43200 > th dose independent rect. 11 20
362 270.32 atmosphere 1005 43200 > th dose independent rect. 14 17
363 270.32 radiation 20 43200 < th dose dependent rect. 17 12
376 270.40 atmosphere 1005 43200 > th dose independent rect. 16 14
380 270.41 wind 9 43200 > th dose independent rect. 11 8
414 270.49 radiation 40 43200 > th dose dependent rect. 14 18
426 270.59 wind 9 43200 < th dose independent rect. 11 7
430 270.60 atmosphere 1005 43200 > th dose independent rect. 4 20
436 270.61 radiation 30 43200 < th dose dependent rect. 17 5
445 270.63 radiation 20 43200 < th dose dependent rect. 17 2
450 270.64 radiation 20 43200 < th dose dependent rect. 17 8
510 270.73 humidity 90 14400 < th dose dependent rect. 22 1
511 270.73 humidity 90 14400 > th dose dependent rect. 1 3
550 270.83 atmosphere 1000 43200 > th dose dependent rect. 23 1
567 270.89 atmosphere 1005 43200 < th dose independent sin 15 NA
591 270.96 atmosphere 1000 43200 > th dose dependent rect. 5 1
627 271.05 atmosphere 1005 43200 > th dose independent no NA NA
633 271.07 atmosphere 1005 43200 > th dose independent rect. 21 23
636 271.08 atmosphere 1000 43200 > th dose dependent rect. 4 4
649 271.13 atmosphere 1000 43200 > th dose dependent rect. 7 1
678 271.22 atmosphere 1005 43200 < th dose independent rect. 19 1
701 271.28 atmosphere 1005 43200 > th dose independent rect. 16 23
747 271.40 atmosphere 1005 43200 > th dose independent rect. 3 15
763 271.42 atmosphere 1000 43200 > th dose dependent rect. 21 11
789 271.48 wind 1 43200 < th dose independent sin 13 NA
801 271.50 wind 1 43200 < th dose independent rect. 22 1
903 271.62 humidity 80 43200 > th dose dependent rect. 14 1
913 271.63 atmosphere 1000 43200 > th dose dependent sin 7 NA
935 271.66 wind 1 43200 < th dose dependent rect. 22 7
970 271.71 wind 5 14400 < th dose independent rect. 18 1