Os01g0114700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LRK33.
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Os01g0114700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LRK33.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.16 | 0.394 | 2.97 | -0.175 | 0.113 | 2.81 | 0.0466 | -6.39 | 0.117 | 4.09 | 48.15 | 636 | -- | -- |
| 73.5 | 0.399 | 2.93 | -0.093 | 0.101 | 0.937 | -0.194 | -- | 0.116 | 4.1 | 44.34 | 2614 | -- | -- |
| 70.08 | 0.39 | 2.97 | -0.179 | 0.108 | 3.04 | -- | -6.9 | 0.124 | 4.16 | 47.94 | 637 | -- | -- |
| 73.39 | 0.399 | 2.93 | -0.0896 | 0.111 | 0.82 | -- | -- | 0.0994 | 3.08 | 41 | 2620 | -- | -- |
| 70.66 | 0.392 | 2.98 | -0.164 | -- | 3.31 | -- | -7.56 | 0.121 | -- | 48 | 648 | -- | -- |
| 74.63 | 0.405 | 2.93 | -0.0702 | 0.119 | -- | -0.122 | -- | 0.0965 | 2.7 | -- | -- | -- | -- |
| 74.68 | 0.405 | 2.93 | -0.0672 | 0.119 | -- | -- | -- | 0.0972 | 2.82 | -- | -- | -- | -- |
| 74.08 | 0.401 | 2.93 | -0.0858 | -- | 0.849 | -- | -- | 0.102 | -- | 39.89 | 2433 | -- | -- |
| 73.6 | 0.4 | 2.93 | -- | 0.109 | 0.78 | -- | -- | 0.109 | 3.14 | 39.81 | 2502 | -- | -- |
| 75.5 | 0.406 | 2.93 | -0.0621 | -- | -- | -- | -- | 0.1 | -- | -- | -- | -- | -- |
| 74.8 | 0.405 | 2.93 | -- | 0.117 | -- | -- | -- | 0.105 | 2.81 | -- | -- | -- | -- |
| 74.27 | 0.401 | 2.93 | -- | -- | 0.817 | -- | -- | 0.112 | -- | 38.42 | 2410 | -- | -- |
| 75.6 | 0.406 | 2.93 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.96 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 5 | 69.01 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 6 | 69.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 9 | 69.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 13 | 69.01 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 22 | 69.01 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 23 | 69.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 43 | 69.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 46 | 69.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 60 | 69.05 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 62 | 69.09 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 63 | 69.09 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 65 | 69.13 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 66 | 69.14 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 69 | 69.16 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 78 | 69.19 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 82 | 69.21 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 84 | 69.21 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 86 | 69.21 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 89 | 69.21 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 90 | 69.21 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 92 | 69.21 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 97 | 69.21 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 98 | 69.21 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 99 | 69.21 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 104 | 69.21 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 109 | 69.21 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 113 | 69.24 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 116 | 69.30 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 120 | 69.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 127 | 69.45 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 128 | 69.45 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 129 | 69.45 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 132 | 69.48 | humidity | 50.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 147 | 69.62 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 187 | 69.72 | radiation | 10.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 202 | 69.79 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 9 |
| 203 | 69.79 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 204 | 69.80 | humidity | 50.0 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 264 | 69.97 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 268 | 70.05 | humidity | 50.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 269 | 70.06 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 271 | 70.06 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 279 | 70.18 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 300 | 70.19 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 19 | 12 |
| 303 | 70.22 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 309 | 70.27 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 320 | 70.28 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 339 | 70.29 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 389 | 70.32 | radiation | 20.0 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 428 | 70.35 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 444 | 70.35 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 932 | 70.69 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 952 | 70.75 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 983 | 70.81 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 16 |
| 988 | 70.84 | radiation | 40.0 | 720 | < th | dose independent | sin | 14 | NA |
| 989 | 70.84 | radiation | 40.0 | 720 | < th | dose independent | rect. | 14 | 16 |