BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0538700 Os12g0538700|AK063610
(104 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0538700 Similar to AT.I.24-1 protein (Fragment) 209 3e-55
Os01g0936000 Similar to AT.I.24-1 protein (Fragment) 151 1e-37
Os12g0538600 Glutaredoxin-like, plant II family protein 147 2e-36
Os11g0655900 Glutaredoxin-like, plant II family protein 143 3e-35
Os11g0656801 Similar to Glutaredoxin 132 7e-32
Os11g0656400 131 1e-31
Os11g0656000 Glutaredoxin-like, plant II family protein 130 3e-31
Os02g0512400 Similar to Glutaredoxin 99 6e-22
Os04g0393500 Glutaredoxin-like, plant II family protein 86 5e-18
Os07g0151100 77 4e-15
Os01g0667900 Glutaredoxin-like, plant II family protein 72 1e-13
Os04g0508300 Glutaredoxin 67 2e-12
Os01g0241400 Glutaredoxin-like, plant II family protein 65 2e-11
Os05g0198200 Glutaredoxin-like, plant II family protein 62 7e-11
>Os12g0538700 Similar to AT.I.24-1 protein (Fragment)
Length = 104
Score = 209 bits (533), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARR 60
MERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARR
Sbjct: 1 MERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARR 60
Query: 61 LGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
LGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL
Sbjct: 61 LGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
>Os01g0936000 Similar to AT.I.24-1 protein (Fragment)
Length = 125
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 90/103 (87%), Gaps = 1/103 (0%)
Query: 2 ERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRL 61
ERVA+LS+++AVVIF ASNC MCH V +LFS+LGV AVHE+D+DP +G+D+ER LA +
Sbjct: 3 ERVARLSSQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDP-NGKDVERALAGMV 61
Query: 62 GRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
GR+PPVPAVFI GKLVG TD+VMSLHLAGKLVP+L+ AGA+WL
Sbjct: 62 GRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGALWL 104
>Os12g0538600 Glutaredoxin-like, plant II family protein
Length = 103
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 85/104 (81%), Gaps = 1/104 (0%)
Query: 1 MERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARR 60
M+RV KL++E+AVVIFT S+C MCHTV LF DLGV A VHELD+DP G++MER L +
Sbjct: 1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDP-RGKEMERALLKL 59
Query: 61 LGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
LGR PPVP VFI GKLVG T+++MSLHL G+L+PMLK AGA+WL
Sbjct: 60 LGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103
>Os11g0655900 Glutaredoxin-like, plant II family protein
Length = 108
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/109 (67%), Positives = 86/109 (78%), Gaps = 6/109 (5%)
Query: 1 MERVAKLSTEKAVVIFTASNCPMCHTVVSLF-SDLGVGAAVHELDRDPLHGRDMERDLAR 59
MERVAKL++E+AVV+FTASNC MCH V SL +LGV AAVHELD+DP GRDMER+LAR
Sbjct: 1 MERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDP-RGRDMERELAR 59
Query: 60 RLGRSP----PVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
RL +PAVF+ G LVG +RVMSLHLAG+LVPMLK AGA+WL
Sbjct: 60 RLNGGGGGGRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
>Os11g0656801 Similar to Glutaredoxin
Length = 109
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 84/108 (77%), Gaps = 6/108 (5%)
Query: 2 ERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRL 61
E VA+L++E+AVV+FT S C MC V +L +L V AAVHELDR+PL G++MER+LARRL
Sbjct: 3 EMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPL-GKEMERELARRL 61
Query: 62 ----GRS-PPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
GR P VPAVFI G LVGST +VM++HL G+LVPMLK AGA+WL
Sbjct: 62 YGSGGRGGPAVPAVFIGGSLVGSTSKVMAMHLKGELVPMLKNAGALWL 109
>Os11g0656400
Length = 109
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 6/108 (5%)
Query: 2 ERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRL 61
E VA+L++E+AVV+FT S C MC V +L +L V AAVHELDR+PL G++MER+LARRL
Sbjct: 3 EMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPL-GKEMERELARRL 61
Query: 62 ----GRS-PPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
GR P VPAVFI G LVG T +VM++HL G+LVPMLK+AGA+WL
Sbjct: 62 YGSGGRGGPAVPAVFIGGSLVGGTSKVMTVHLKGELVPMLKSAGALWL 109
>Os11g0656000 Glutaredoxin-like, plant II family protein
Length = 109
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 84/108 (77%), Gaps = 6/108 (5%)
Query: 2 ERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRL 61
E VA+L++E+AVV+FT S C MC V +L +L V AAVHELDRDPL G++ME++LARRL
Sbjct: 3 EMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPL-GKEMEKELARRL 61
Query: 62 ----GR-SPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
GR P VPAVFI G LVG T +VM++HL G+LVP+LK+AGA+WL
Sbjct: 62 YGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGALWL 109
>Os02g0512400 Similar to Glutaredoxin
Length = 135
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 77/109 (70%), Gaps = 8/109 (7%)
Query: 3 RVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLG 62
RV +L++E AVV+F+ S+C MCH V LF +GV VHELD DP GR++ER LAR +G
Sbjct: 28 RVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDP-RGRELERALARLVG 86
Query: 63 R------SPPV-PAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
SPPV P VFI GKLVG+ DRVM+ H+ G LVP+LK AGA+WL
Sbjct: 87 YGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
>Os04g0393500 Glutaredoxin-like, plant II family protein
Length = 135
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 59/88 (67%), Gaps = 5/88 (5%)
Query: 21 CPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLAR----RLGRSPPVPAVFIAGKL 76
C MCH V LF +GV AVHELD DP GRD+ER LAR + VP VFI GKL
Sbjct: 49 CCMCHAVKRLFCGMGVHPAVHELDLDP-RGRDLERALARLVGAGGAAAAAVPVVFIGGKL 107
Query: 77 VGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
VG+ DRVM+ H+ G LVP+LK AGA+WL
Sbjct: 108 VGAMDRVMAAHINGSLVPLLKEAGALWL 135
>Os07g0151100
Length = 127
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 65/103 (63%)
Query: 2 ERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRL 61
ERVA++++ AVV+F+AS C MCH V L LGVG AV+ELD+
Sbjct: 25 ERVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLP 84
Query: 62 GRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
PPVP VF+ G+L+G ++VM+ H+ G LVP+LK AGA+WL
Sbjct: 85 PGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGALWL 127
>Os01g0667900 Glutaredoxin-like, plant II family protein
Length = 147
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 10 EKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPA 69
E V++ C + H V L LGV AVHE+ G + + G + +PA
Sbjct: 58 ESPVLVVGRRGCCLIHVVKRLLQGLGVNPAVHEVA-----GEAALKGVVPAGGEAAALPA 112
Query: 70 VFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
VF+ GKL+G DR+M++H++G+LVP+LK AGA+WL
Sbjct: 113 VFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
>Os04g0508300 Glutaredoxin
Length = 112
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 13 VVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFI 72
VV+++ S CP C V LF LG ELD + G +++ LA G+ VP VFI
Sbjct: 15 VVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGES-DGSELQSALAEWTGQRT-VPNVFI 72
Query: 73 AGKLVGSTDRVMSLHLAGKLVPMLKAAGAI 102
GK +G D ++L+ GKLVP+L AGAI
Sbjct: 73 NGKHIGGCDDTLALNNEGKLVPLLTEAGAI 102
>Os01g0241400 Glutaredoxin-like, plant II family protein
Length = 136
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 4 VAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHEL--DRDPLHGRDMERDLARRL 61
V + EK VV+ C M H L G AV E+ D DP D RR
Sbjct: 21 VRRAVEEKPVVVVGRRGCCMAHVARRLLLGQGANPAVLEVGDDADPAALVDAALQARRRK 80
Query: 62 GRSP-------------PVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
PAVFI G+LVG DR+M++H+AG+LVP+LK AGA+WL
Sbjct: 81 DGGDKAAAGDGGGGAAVAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136
>Os05g0198200 Glutaredoxin-like, plant II family protein
Length = 138
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 2 ERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRL 61
ER+ +L E VVIF C MCH + L + +G A V ELD A
Sbjct: 43 ERIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIELDEAAEEAAASAAAAAA-- 100
Query: 62 GRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIW 103
VPA+F+ G VG D +M LHL+G+LVP L+ GA+
Sbjct: 101 -----VPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGALC 137
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,391,395
Number of extensions: 131750
Number of successful extensions: 549
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 15
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)