Os05g0198200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutaredoxin-like, plant II family protein.
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Os05g0198200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutaredoxin-like, plant II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.21 | 0.678 | 9.41 | 0.761 | 0.782 | -26.4 | 0.845 | -54.2 | 0.104 | 8.08 | 0.9164 | 1276 | 9.03 | 3.05 |
| 294.3 | 0.805 | 9.86 | 2.45 | 0.835 | -1.48 | 0.314 | -- | 0.265 | 8.46 | 0.9164 | 1276 | 9.03 | 3.05 |
| 210.01 | 0.675 | 9.42 | 0.8 | 0.779 | -26.3 | -- | -53.8 | 0.107 | 8.45 | 0.8799 | 1258 | 9.01 | 3.07 |
| 224.45 | 0.698 | 9.91 | 2.05 | 0.724 | -2.76 | -- | -- | 0.125 | 7.72 | 1.329 | 1114 | 11.2 | 2.85 |
| 242.57 | 0.725 | 9.45 | 0.835 | -- | -25.8 | -- | -53 | 0.111 | -- | 0.6369 | 1181 | 9.03 | 3.25 |
| 296.45 | 0.807 | 9.86 | 2.47 | 0.829 | -- | 0.384 | -- | 0.271 | 8.39 | -- | -- | -- | -- |
| 296.83 | 0.807 | 9.86 | 2.48 | 0.825 | -- | -- | -- | 0.272 | 8.56 | -- | -- | -- | -- |
| 253.01 | 0.741 | 9.91 | 2.04 | -- | -2.9 | -- | -- | 0.15 | -- | 1.544 | 1114 | 11.2 | 2.85 |
| 310.9 | 0.821 | 9.93 | -- | 0.796 | -3.4 | -- | -- | -0.136 | 7.98 | 0.8715 | 2688 | 11.5 | 3.38 |
| 335.06 | 0.855 | 9.88 | 2.48 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 458.83 | 1 | 9.92 | -- | 0.836 | -- | -- | -- | -0.0043 | 8.34 | -- | -- | -- | -- |
| 343.84 | 0.864 | 9.98 | -- | -- | -3.57 | -- | -- | -0.183 | -- | 0.7633 | 2672 | 11.7 | 3.28 |
| 497.6 | 1.04 | 9.94 | -- | -- | -- | -- | -- | 0.00403 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 215.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 2 | 215.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 5 | 217.66 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 13 | 220.19 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 15 | 220.58 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 17 | 220.74 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 18 | 220.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 20 | 221.04 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 23 | 221.16 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 47 | 223.76 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 58 | 224.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 64 | 224.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 65 | 224.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 68 | 224.85 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 71 | 225.04 | humidity | 90 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 74 | 225.15 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 97 | 225.98 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 108 | 226.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 110 | 226.52 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 112 | 226.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 115 | 226.60 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 127 | 226.91 | humidity | 90 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 130 | 227.01 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 136 | 227.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 207 | 229.45 | wind | 7 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 238 | 230.15 | wind | 7 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 248 | 230.44 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 255 | 230.74 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 257 | 230.81 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 261 | 231.16 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 296 | 232.31 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 302 | 232.56 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 304 | 232.56 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 306 | 232.56 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 357 | 232.56 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 359 | 232.56 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 361 | 232.56 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 421 | 232.95 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 422 | 232.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 430 | 233.28 | wind | 7 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 451 | 233.72 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 458 | 233.94 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 471 | 234.44 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 495 | 235.35 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 507 | 235.56 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 509 | 235.60 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 21 |
| 514 | 235.70 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 524 | 235.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 536 | 236.03 | radiation | 1 | 720 | > th | dose independent | sin | 23 | NA |
| 545 | 236.30 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 563 | 236.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 586 | 237.14 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 12 |
| 597 | 237.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 603 | 237.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 615 | 237.62 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 617 | 237.65 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 650 | 238.03 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 670 | 238.21 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 676 | 238.30 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 704 | 238.50 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 714 | 238.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 715 | 238.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 716 | 238.66 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 723 | 238.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 770 | 239.19 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 787 | 239.33 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 838 | 239.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 839 | 239.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 844 | 239.73 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 895 | 240.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 907 | 240.03 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 919 | 240.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 945 | 240.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 947 | 240.25 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 978 | 240.52 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 991 | 240.62 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |