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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0241400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutaredoxin-like, plant II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.06 (0.273) R2 : 0.397
β1 : 10.7 (2.56) R2dD : 7.26 R2D : -10.1
β2 : 0.826 (0.109) R2dC : 0.0855 R2C : -1.97
β3 : -8.2 (2.1) R2dE : 7.98 R2E : -11.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 85.8 (19.8) R2dD*E : 16.2 R2D*E : -12.6
γ1 : 1 (0.0873) R2dN8 : 0.241 R2N8 : -1.39
σ : 0.752
deviance : 260.57
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_____
C
peak time of C : 7.64
E
wheather : temperature
threshold : 30.46
memory length : 5173
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 0.533

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.43 0.754 2.07 10.7 0.823 -8.19 -1.05 85.8 1 7.73 30.42 5087 18 0.518
291.35 0.795 3.38 -1.2 1.13 0.991 -0.41 -- 0.345 6.31 21.02 47520 14 5.65
260.57 0.752 2.06 10.7 0.826 -8.2 -- 85.8 1 7.64 30.46 5173 18 0.533
288.73 0.791 3.37 -1.25 1.08 0.999 -- -- 0.395 6.95 20.4 47520 14.5 4.68
295.72 0.801 1.98 11.6 -- -9.05 -- 94.4 1.07 -- 30.8 4322 18.3 14.6
303.75 0.817 3.27 -0.227 1.08 -- -0.433 -- 0.861 6.93 -- -- -- --
304.21 0.817 3.27 -0.236 1.08 -- -- -- 0.861 6.86 -- -- -- --
349.45 0.871 3.4 -1.3 -- 1.03 -- -- 0.391 -- 19.28 47520 17 6.15
300.53 0.807 3.29 -- 1.06 0.298 -- -- 0.752 6.95 30.4 47520 16.8 7.34
365.22 0.893 3.29 -0.213 -- -- -- -- 0.882 -- -- -- -- --
305.68 0.818 3.26 -- 1.08 -- -- -- 0.888 6.87 -- -- -- --
356.65 0.882 3.28 -- -- -0.644 -- -- 0.92 -- 19.28 47520 17 6.15
366.42 0.893 3.29 -- -- -- -- -- 0.906 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.03 temperature 30 4320 > th dose dependent rect. 18 1
16 266.26 humidity 60 4320 < th dose independent rect. 18 1
17 266.39 humidity 50 4320 < th dose dependent rect. 16 1
31 266.85 humidity 60 4320 < th dose dependent rect. 18 1
45 267.40 humidity 60 4320 > th dose independent rect. 18 2
48 267.57 humidity 60 4320 > th dose independent rect. 18 11
52 267.75 humidity 60 4320 > th dose independent rect. 18 8
56 267.87 humidity 60 4320 > th dose independent rect. 18 13
59 268.68 temperature 30 4320 > th dose independent rect. 18 1
73 268.92 temperature 30 4320 < th dose independent rect. 18 6
74 269.13 humidity 50 4320 < th dose independent rect. 16 1
79 269.36 wind 7 43200 < th dose dependent rect. 10 2
80 269.39 temperature 30 4320 < th dose independent rect. 18 1
85 269.56 wind 1 43200 > th dose dependent rect. 10 2
168 270.16 temperature 30 4320 < th dose independent rect. 18 14
170 270.18 temperature 30 4320 < th dose independent rect. 18 11
205 270.52 wind 1 43200 > th dose dependent rect. 21 8
206 270.52 wind 1 43200 > th dose dependent rect. 23 14
215 270.62 wind 1 43200 > th dose dependent rect. 21 16
218 270.69 wind 9 43200 < th dose dependent rect. 21 8
234 270.72 wind 7 43200 < th dose dependent rect. 23 6
236 270.73 radiation 20 4320 > th dose dependent rect. 7 1
238 270.77 wind 9 43200 < th dose dependent rect. 23 14
266 270.87 radiation 20 4320 > th dose independent rect. 7 1
267 270.89 wind 7 43200 < th dose dependent rect. 24 4
276 270.94 wind 9 43200 < th dose dependent rect. 1 13
296 270.99 wind 9 43200 < th dose dependent rect. 21 16
313 271.04 wind 3 43200 > th dose dependent rect. 8 6
329 271.12 radiation 1 720 > th dose independent rect. 18 11
382 271.42 wind 3 43200 > th dose dependent sin 5 NA
403 271.48 wind 1 43200 > th dose dependent rect. 23 6
415 271.57 wind 1 43200 > th dose dependent sin 7 NA
450 271.70 wind 1 43200 > th dose dependent rect. 24 4
481 271.81 radiation 1 720 > th dose independent rect. 18 1
499 271.86 temperature 30 720 > th dose dependent rect. 18 1
517 271.87 wind 9 43200 < th dose dependent sin 7 NA
543 272.02 wind 3 43200 > th dose independent rect. 10 2
545 272.03 humidity 50 4320 < th dose independent rect. 16 22
547 272.04 wind 3 43200 < th dose independent rect. 2 2
551 272.06 wind 5 43200 < th dose independent rect. 2 13
555 272.10 radiation 40 1440 > th dose independent rect. 14 19
568 272.18 wind 5 43200 < th dose independent rect. 24 16
581 272.26 radiation 40 4320 > th dose independent rect. 8 1
624 272.38 temperature 30 14400 > th dose dependent sin 12 NA
631 272.40 wind 5 43200 > th dose independent rect. 24 16
640 272.45 wind 5 43200 < th dose independent rect. 9 5
641 272.46 wind 3 43200 > th dose independent rect. 2 3
650 272.49 wind 5 43200 > th dose independent rect. 2 13
656 272.50 wind 5 43200 < th dose independent sin 4 NA
678 272.60 temperature 25 720 > th dose dependent rect. 21 1
760 272.88 wind 5 43200 > th dose independent sin 4 NA
794 273.01 wind 5 43200 > th dose independent rect. 9 5
807 273.06 radiation 40 1440 < th dose independent rect. 6 3
810 273.07 wind 7 43200 < th dose independent rect. 12 1
830 273.13 wind 3 43200 < th dose independent rect. 22 7
835 273.15 wind 3 43200 > th dose independent rect. 22 7
837 273.16 wind 3 43200 < th dose independent rect. 24 5
852 273.21 radiation 40 1440 > th dose independent rect. 14 1
857 273.23 wind 3 43200 > th dose independent rect. 24 5
877 273.31 wind 7 43200 > th dose independent rect. 12 1
955 273.49 temperature 25 14400 > th dose dependent rect. 22 2
979 273.57 radiation 20 4320 < th dose independent rect. 7 1