BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0241400 Os01g0241400|AK107708
         (136 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0241400  Glutaredoxin-like, plant II family protein          115   7e-27
Os01g0667900  Glutaredoxin-like, plant II family protein           80   3e-16
Os11g0655900  Glutaredoxin-like, plant II family protein           63   7e-11

>Os01g0241400 Glutaredoxin-like, plant II family protein
          Length = 136

 Score =  115 bits (289), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 65/100 (65%)

Query: 37  GCCMAHVARRLLLGQGANPAVLEVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
           GCCMAHVARRLLLGQGANPAVLEVG                                   
Sbjct: 37  GCCMAHVARRLLLGQGANPAVLEVGDDADPAALVDAALQARRRKDGGDKAAAGDGGGGAA 96

Query: 97  VAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136
           VAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL
Sbjct: 97  VAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136



>Os01g0667900 Glutaredoxin-like, plant II family protein
          Length = 147

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 56/100 (56%), Gaps = 20/100 (20%)

Query: 37  GCCMAHVARRLLLGQGANPAVLEVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 96
           GCC+ HV +RLL G G NPAV EV                                    
Sbjct: 68  GCCLIHVVKRLLQGLGVNPAVHEVAGEAALKGVVPAGGEAA------------------- 108

Query: 97  VAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136
            A PAVF+GG+L+GGLDRLMA+H++GELVP+LK+AGALWL
Sbjct: 109 -ALPAVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147



>Os11g0655900 Glutaredoxin-like, plant II family protein
          Length = 108

 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 35/39 (89%)

Query: 98  AFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136
           A PAVF+GG LVGG +R+M++H+AGELVP+LK AGALWL
Sbjct: 70  ALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.144    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,285,579
Number of extensions: 44531
Number of successful extensions: 150
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 4
Length of query: 136
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 46
Effective length of database: 12,336,541
Effective search space: 567480886
Effective search space used: 567480886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 150 (62.4 bits)