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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0655900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutaredoxin-like, plant II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.6 (0.0828) R2 : 0.544
β1 : -2.5 (0.332) R2dD : 0.0761 R2D : 0.145
β2 : 1.85 (0.188) R2dC : 0.106 R2C : 0.108
β3 : -4.62 (0.302) R2dE : 0.288 R2E : 0.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.35 (1.14) R2dD*E : 0.0213 R2D*E : 0.0392
γ1 : 0.131 (0.184) R2dN8 : -0.000294 R2N8 : -0.00516
σ : 1.48
deviance : 1005.14
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_____
C
peak time of C : 23.6
E
wheather : humidity
threshold : 79
memory length : 1453
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.98
open length of G : 6.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
995.11 1.48 5.59 -2.67 2.11 -4.57 -1.94 4.17 0.183 23.7 80 1433 7.98 6.02
1010.19 1.48 5.69 -3.03 2.1 -4.15 -1.75 -- -0.144 23.7 77.48 1430 7.87 6.41
1005.14 1.48 5.6 -2.5 1.85 -4.62 -- 4.35 0.131 23.6 79 1453 7.98 6.1
1020.56 1.49 5.7 -2.91 2.22 -4.2 -- -- -0.147 23.6 77.34 1425 8.02 6.02
1141.03 1.57 5.59 -2.63 -- -5.68 -- 5.8 -0.0112 -- 78.17 1568 8.08 6.12
1509.27 1.82 5.87 -4.05 1.99 -- -2.49 -- -0.937 23.8 -- -- -- --
1535.32 1.83 5.87 -3.94 2.01 -- -- -- -0.923 23.6 -- -- -- --
1162.6 1.59 5.62 -3.25 -- -5.59 -- -- -0.0369 -- 79 1569 8.22 6.44
1218.67 1.63 5.66 -- 2.36 -4.53 -- -- 0.114 23.6 76.74 1414 7.63 6.4
1788.87 1.98 5.82 -3.89 -- -- -- -- -0.901 -- -- -- -- --
1945.36 2.06 5.77 -- 1.97 -- -- -- -0.484 23.4 -- -- -- --
1401.74 1.74 5.61 -- -- -5.81 -- -- -0.053 -- 78.73 1556 7.32 7.02
2187.83 2.18 5.72 -- -- -- -- -- -0.469 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 996.20 humidity 80.0 1440 < th dose independent rect. 8 6
8 1012.57 humidity 80.0 1440 > th dose independent rect. 8 6
9 1015.00 humidity 80.0 1440 < th dose independent rect. 11 2
23 1026.77 humidity 80.0 1440 > th dose independent rect. 11 2
48 1042.52 humidity 80.0 1440 < th dose independent sin 3 NA
76 1054.53 humidity 80.0 1440 > th dose independent sin 2 NA
100 1063.98 precipitation 0.1 14400 > th dose dependent rect. 5 2
102 1064.43 radiation 1.0 1440 < th dose dependent sin 23 NA
105 1066.12 radiation 1.0 1440 < th dose dependent rect. 7 17
108 1066.22 radiation 1.0 1440 < th dose dependent rect. 7 14
111 1066.38 humidity 70.0 1440 > th dose dependent rect. 9 5
112 1066.44 radiation 1.0 1440 < th dose dependent rect. 7 22
115 1066.61 radiation 1.0 1440 < th dose dependent rect. 18 23
120 1067.12 radiation 1.0 1440 < th dose dependent rect. 9 21
130 1068.87 radiation 1.0 1440 < th dose dependent rect. 9 15
133 1068.96 radiation 1.0 1440 < th dose dependent rect. 9 12
140 1069.40 precipitation 0.1 14400 > th dose independent rect. 5 2
174 1072.20 precipitation 0.1 14400 < th dose independent rect. 5 2
175 1072.20 precipitation 0.1 14400 < th dose dependent rect. 5 2
183 1073.14 radiation 1.0 1440 < th dose dependent rect. 13 11
185 1073.19 radiation 1.0 1440 < th dose dependent rect. 13 8
197 1073.71 humidity 70.0 1440 > th dose dependent rect. 11 2
244 1076.39 radiation 1.0 1440 > th dose independent rect. 10 20
247 1076.73 radiation 1.0 1440 < th dose independent rect. 10 20
263 1079.05 humidity 60.0 14400 < th dose independent rect. 16 17
318 1081.70 radiation 1.0 1440 < th dose dependent rect. 22 23
320 1081.75 radiation 1.0 1440 < th dose dependent rect. 22 19
321 1081.77 radiation 1.0 1440 < th dose dependent no NA NA
333 1082.01 radiation 1.0 1440 < th dose independent rect. 7 23
356 1083.08 radiation 1.0 1440 > th dose independent rect. 7 23
363 1083.99 wind 7.0 14400 > th dose independent rect. 11 5
364 1084.07 radiation 1.0 1440 < th dose independent sin 22 NA
369 1084.68 wind 7.0 14400 < th dose independent rect. 11 5
372 1084.92 humidity 60.0 14400 > th dose independent rect. 16 17
382 1085.64 radiation 1.0 1440 > th dose independent sin 22 NA
406 1088.05 radiation 1.0 1440 < th dose dependent rect. 15 23
413 1089.70 wind 7.0 14400 > th dose independent rect. 11 7
416 1090.18 humidity 60.0 14400 < th dose independent rect. 16 2
419 1090.34 humidity 70.0 14400 < th dose dependent rect. 16 17
424 1090.71 humidity 60.0 14400 > th dose independent rect. 16 9
426 1090.73 humidity 60.0 14400 > th dose independent rect. 16 5
434 1090.92 radiation 1.0 1440 < th dose independent rect. 7 17
435 1090.94 radiation 1.0 1440 < th dose independent rect. 7 14
440 1091.17 humidity 60.0 14400 < th dose independent rect. 16 6
479 1092.66 wind 7.0 14400 < th dose independent rect. 11 7
490 1093.02 humidity 60.0 14400 < th dose independent sin 12 NA
492 1093.08 radiation 1.0 1440 > th dose independent rect. 7 12
508 1093.54 radiation 1.0 1440 < th dose independent sin 16 NA
511 1093.62 radiation 1.0 1440 < th dose independent rect. 10 11
512 1093.62 radiation 1.0 1440 < th dose independent rect. 10 14
520 1094.21 radiation 1.0 1440 > th dose independent sin 16 NA
531 1094.60 radiation 1.0 1440 > th dose independent rect. 10 9
576 1095.39 radiation 1.0 1440 < th dose independent rect. 13 8
577 1095.41 radiation 1.0 1440 < th dose independent rect. 13 11
625 1096.88 radiation 1.0 1440 > th dose independent rect. 13 6
637 1097.07 radiation 1.0 1440 < th dose independent rect. 5 16
638 1097.07 radiation 1.0 1440 < th dose independent rect. 5 19
692 1099.47 wind 7.0 43200 > th dose independent rect. 15 3
711 1100.46 radiation 1.0 1440 > th dose independent rect. 5 14
729 1100.75 humidity 60.0 14400 > th dose independent sin 12 NA
752 1101.10 humidity 60.0 14400 < th dose dependent rect. 15 19
768 1101.42 radiation 1.0 1440 < th dose dependent rect. 15 2
778 1101.58 radiation 1.0 1440 < th dose independent rect. 22 23
785 1101.70 radiation 1.0 1440 < th dose independent no NA NA
787 1101.71 humidity 60.0 14400 < th dose dependent rect. 16 1
803 1102.11 radiation 1.0 1440 < th dose independent rect. 20 23
804 1102.14 radiation 1.0 1440 < th dose independent rect. 18 23
805 1102.15 humidity 70.0 14400 < th dose dependent rect. 16 6
835 1102.82 radiation 1.0 1440 > th dose independent rect. 18 23
868 1104.03 radiation 1.0 1440 > th dose independent no NA NA
938 1106.25 wind 7.0 43200 < th dose independent rect. 15 3
952 1107.08 humidity 70.0 14400 < th dose dependent sin 12 NA