BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0655900 Os11g0655900|AK108017
(108 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0655900 Glutaredoxin-like, plant II family protein 199 3e-52
Os12g0538700 Similar to AT.I.24-1 protein (Fragment) 143 3e-35
Os11g0656400 141 8e-35
Os11g0656000 Glutaredoxin-like, plant II family protein 141 1e-34
Os11g0656801 Similar to Glutaredoxin 140 2e-34
Os12g0538600 Glutaredoxin-like, plant II family protein 140 3e-34
Os01g0936000 Similar to AT.I.24-1 protein (Fragment) 128 9e-31
Os02g0512400 Similar to Glutaredoxin 99 9e-22
Os04g0393500 Glutaredoxin-like, plant II family protein 96 6e-21
Os07g0151100 78 2e-15
Os01g0241400 Glutaredoxin-like, plant II family protein 75 9e-15
Os01g0667900 Glutaredoxin-like, plant II family protein 75 1e-14
>Os11g0655900 Glutaredoxin-like, plant II family protein
Length = 108
Score = 199 bits (507), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/108 (94%), Positives = 102/108 (94%)
Query: 1 MERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARR 60
MERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARR
Sbjct: 1 MERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARR 60
Query: 61 LNXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
LN RALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL
Sbjct: 61 LNGGGGGGRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
>Os12g0538700 Similar to AT.I.24-1 protein (Fragment)
Length = 104
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/109 (67%), Positives = 86/109 (78%), Gaps = 6/109 (5%)
Query: 1 MERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDP-RGRDMERELAR 59
MERVAKL++E+AVV+FTASNC MCH V SL +LGV AAVHELD+DP GRDMER+LAR
Sbjct: 1 MERVAKLSTEKAVVIFTASNCPMCHTVVSLF-SDLGVGAAVHELDRDPLHGRDMERDLAR 59
Query: 60 RLNXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
RL +PAVF+ G LVG +RVMSLHLAG+LVPMLK AGA+WL
Sbjct: 60 RLGRSP----PVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104
>Os11g0656400
Length = 109
Score = 141 bits (356), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 89/108 (82%), Gaps = 2/108 (1%)
Query: 2 ERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRL 61
E VA+LASERAVVVFT S C MC AVT+LL GEL V+AAVHELD++P G++MERELARRL
Sbjct: 3 EMVARLASERAVVVFTKSGCCMCTAVTTLL-GELAVSAAVHELDREPLGKEMERELARRL 61
Query: 62 -NXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
A+PAVF+GG+LVGG ++VM++HL GELVPMLK+AGALWL
Sbjct: 62 YGSGGRGGPAVPAVFIGGSLVGGTSKVMTVHLKGELVPMLKSAGALWL 109
>Os11g0656000 Glutaredoxin-like, plant II family protein
Length = 109
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 89/108 (82%), Gaps = 2/108 (1%)
Query: 2 ERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRL 61
E VA+LASERAVVVFT S C MC AVT+LL GEL V+AAVHELD+DP G++ME+ELARRL
Sbjct: 3 EMVARLASERAVVVFTKSGCCMCTAVTTLL-GELAVSAAVHELDRDPLGKEMEKELARRL 61
Query: 62 -NXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
A+PAVF+GG+LVGG ++VM++HL GELVP+LK+AGALWL
Sbjct: 62 YGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGALWL 109
>Os11g0656801 Similar to Glutaredoxin
Length = 109
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 88/108 (81%), Gaps = 2/108 (1%)
Query: 2 ERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRL 61
E VA+LASERAVVVFT S C MC AVT+LL GEL V+AAVHELD++P G++MERELARRL
Sbjct: 3 EMVARLASERAVVVFTKSGCCMCTAVTTLL-GELAVSAAVHELDREPLGKEMERELARRL 61
Query: 62 -NXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
A+PAVF+GG+LVG ++VM++HL GELVPMLKNAGALWL
Sbjct: 62 YGSGGRGGPAVPAVFIGGSLVGSTSKVMAMHLKGELVPMLKNAGALWL 109
>Os12g0538600 Glutaredoxin-like, plant II family protein
Length = 103
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/108 (64%), Positives = 83/108 (76%), Gaps = 5/108 (4%)
Query: 1 MERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARR 60
M+RV KLASERAVV+FT S+C MCH VT L +LGVNA VHELD+DPRG++MER L +
Sbjct: 1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFC-DLGVNALVHELDQDPRGKEMERALLKL 59
Query: 61 LNXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
L +P VF+GG LVGG N++MSLHL GEL+PMLKNAGALWL
Sbjct: 60 LGRGP----PVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103
>Os01g0936000 Similar to AT.I.24-1 protein (Fragment)
Length = 125
Score = 128 bits (321), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 82/107 (76%), Gaps = 5/107 (4%)
Query: 2 ERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRL 61
ERVA+L+S+RAVV+F ASNC MCH V +L ELGV+ AVHE+DKDP G+D+ER LA +
Sbjct: 3 ERVARLSSQRAVVIFGASNCFMCHVVKTLF-SELGVSWAVHEVDKDPNGKDVERALAGMV 61
Query: 62 NXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
+PAVF+GG LVG ++VMSLHLAG+LVP+L+ AGALWL
Sbjct: 62 GRTP----PVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGALWL 104
>Os02g0512400 Similar to Glutaredoxin
Length = 135
Score = 98.6 bits (244), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 75/109 (68%), Gaps = 4/109 (3%)
Query: 3 RVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRLN 62
RV +LASE AVVVF+ S+C MCHAV L G +GV+ VHELD DPRGR++ER LAR +
Sbjct: 28 RVERLASESAVVVFSVSSCCMCHAVKRLFCG-MGVHPTVHELDLDPRGRELERALARLVG 86
Query: 63 X---XXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
+P VF+GG LVG +RVM+ H+ G LVP+LK AGALWL
Sbjct: 87 YGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
>Os04g0393500 Glutaredoxin-like, plant II family protein
Length = 135
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 6 KLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRLNXXX 65
+LASE AVVVF+ S+C MCHAV L G +GV+ AVHELD DPRGRD+ER LAR +
Sbjct: 34 RLASESAVVVFSVSSCCMCHAVKRLFCG-MGVHPAVHELDLDPRGRDLERALARLVGAGG 92
Query: 66 XXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
A+P VF+GG LVG +RVM+ H+ G LVP+LK AGALWL
Sbjct: 93 AAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
>Os07g0151100
Length = 127
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 2 ERVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRL 61
ERVA++AS AVVVF+AS C MCH V LL+G LGV AV+ELD+ D++ L++ L
Sbjct: 25 ERVARMASGNAVVVFSASGCCMCHVVKRLLLG-LGVGPAVYELDQLAAAADIQAALSQLL 83
Query: 62 NXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
+ L+GG +VM+ H+ G LVP+LK AGALWL
Sbjct: 84 PPGQPPVPVVFVGG---RLLGGVEKVMACHINGTLVPLLKQAGALWL 127
>Os01g0241400 Glutaredoxin-like, plant II family protein
Length = 136
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 64/117 (54%), Gaps = 13/117 (11%)
Query: 4 VAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHEL--DKDP----------RGR 51
V + E+ VVV C M H LL+G+ G N AV E+ D DP R R
Sbjct: 21 VRRAVEEKPVVVVGRRGCCMAHVARRLLLGQ-GANPAVLEVGDDADPAALVDAALQARRR 79
Query: 52 DMERELARRLNXXXXXXRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
+ A + A PAVF+GG LVGG +R+M++H+AGELVP+LK AGALWL
Sbjct: 80 KDGGDKAAAGDGGGGAAVAFPAVFIGGRLVGGLDRLMAMHMAGELVPVLKQAGALWL 136
>Os01g0667900 Glutaredoxin-like, plant II family protein
Length = 147
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 9/100 (9%)
Query: 9 SERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRLNXXXXXX 68
+E V+V C + H V LL G LGVN AVHE+ + + +
Sbjct: 57 AESPVLVVGRRGCCLIHVVKRLLQG-LGVNPAVHEVAGE--------AALKGVVPAGGEA 107
Query: 69 RALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
ALPAVFVGG L+GG +R+M++H++GELVP+LK AGALWL
Sbjct: 108 AALPAVFVGGKLLGGLDRLMAVHISGELVPILKKAGALWL 147
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,194,710
Number of extensions: 112552
Number of successful extensions: 229
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 14
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)