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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0538600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutaredoxin-like, plant II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0253) R2 : 0.00856
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.0533) R2dN8 : 0.011 R2N8 : 0.00856
σ : 0.477
deviance : 104.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.12 0.463 3.32 -0.0796 0.167 -0.311 -0.146 1.85 0.0852 6.84 1.12 16 -- --
100.36 0.467 3.3 0.00955 0.193 -0.181 -0.377 -- 0.104 6.06 1.086 16 -- --
97.17 0.459 3.32 -0.0835 0.166 -0.317 -- 1.88 0.0855 7.14 1.1 16 -- --
100.6 0.467 3.3 0.00401 0.188 -0.195 -- -- 0.107 7.06 1 14 -- --
98.48 0.462 3.33 -0.0938 -- -0.386 -- 1.96 0.0879 -- 1.111 16 -- --
101.09 0.471 3.3 0.0304 0.233 -- -0.391 -- 0.103 5.85 -- -- -- --
101.4 0.472 3.3 0.0286 0.234 -- -- -- 0.105 6.37 -- -- -- --
102.19 0.471 3.3 -0.0131 -- -0.223 -- -- 0.118 -- 1.301 15 -- --
100.6 0.467 3.3 -- 0.189 -0.193 -- -- 0.107 6.93 1.001 14 -- --
104.24 0.477 3.3 0.0347 -- -- -- -- 0.11 -- -- -- -- --
101.42 0.471 3.3 -- 0.234 -- -- -- 0.101 6.37 -- -- -- --
102.2 0.471 3.3 -- -- -0.221 -- -- 0.12 -- 1.32 15 -- --
104.27 0.477 3.3 -- -- -- -- -- 0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.92 atmosphere 1005.0 30 > th dose independent rect. 2 1
2 83.95 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 84.12 wind 3.0 30 < th dose independent rect. 2 1
7 84.20 temperature 20.0 30 > th dose dependent rect. 2 1
10 84.23 temperature 10.0 30 > th dose dependent rect. 2 1
12 84.27 wind 9.0 30 < th dose dependent rect. 2 1
15 84.29 temperature 10.0 30 > th dose independent rect. 2 1
17 84.29 temperature 30.0 30 < th dose independent rect. 2 1
18 84.29 humidity 50.0 30 > th dose independent rect. 2 1
22 84.29 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 84.29 radiation 1.0 30 < th dose independent rect. 2 1
29 84.29 precipitation 0.1 30 < th dose independent rect. 2 1
30 84.29 temperature 10.0 30 > th dose independent rect. 3 23
31 84.29 radiation 1.0 30 < th dose dependent rect. 2 1
36 84.29 precipitation 0.1 30 < th dose dependent rect. 2 1
40 84.40 humidity 50.0 30 > th dose dependent rect. 2 1
45 84.67 temperature 30.0 30 < th dose dependent rect. 2 1
46 84.69 wind 1.0 30 > th dose independent rect. 2 1
47 84.71 humidity 90.0 30 > th dose independent rect. 2 1
50 84.76 radiation 1.0 43200 < th dose dependent rect. 3 1
53 84.86 atmosphere 1015.0 30 < th dose dependent rect. 2 1
58 85.18 radiation 1.0 4320 < th dose dependent rect. 3 1
73 85.35 wind 9.0 1440 < th dose independent rect. 3 1
74 85.35 temperature 10.0 1440 > th dose independent rect. 3 1
77 85.35 temperature 30.0 1440 < th dose independent rect. 3 1
81 85.35 humidity 50.0 1440 > th dose independent rect. 3 1
90 85.35 atmosphere 995.0 1440 > th dose independent rect. 3 1
91 85.35 radiation 1.0 1440 < th dose independent rect. 3 1
111 85.35 temperature 10.0 1440 > th dose independent rect. 4 23
158 86.46 atmosphere 1000.0 30 > th dose independent rect. 3 23
166 87.00 wind 9.0 30 < th dose independent rect. 3 23
175 87.64 precipitation 0.1 30 < th dose independent rect. 3 23
176 87.64 precipitation 0.1 30 < th dose dependent rect. 3 23
196 90.66 humidity 50.0 30 > th dose independent rect. 3 23
203 91.24 humidity 90.0 90 < th dose independent rect. 1 6
209 91.70 wind 9.0 720 < th dose independent rect. 19 8
211 91.72 atmosphere 995.0 720 > th dose independent rect. 7 8
212 91.79 atmosphere 995.0 720 > th dose independent rect. 15 16
214 92.01 atmosphere 995.0 720 > th dose independent rect. 3 16
215 92.06 temperature 10.0 720 > th dose independent rect. 7 8
216 92.06 atmosphere 1015.0 720 < th dose independent rect. 7 8
217 92.06 temperature 10.0 720 > th dose independent rect. 15 16
221 92.14 precipitation 0.1 720 < th dose independent rect. 19 8
222 92.14 precipitation 0.1 720 < th dose dependent rect. 19 8
224 92.25 temperature 10.0 720 > th dose independent rect. 19 8
225 92.25 temperature 30.0 720 < th dose independent rect. 19 8
226 92.25 humidity 50.0 720 > th dose independent rect. 19 8
227 92.25 atmosphere 995.0 720 > th dose independent rect. 19 8
228 92.25 radiation 1.0 720 < th dose independent rect. 19 8
233 92.25 temperature 10.0 720 > th dose independent rect. 3 16
234 92.25 radiation 1.0 720 < th dose dependent rect. 19 8
269 92.83 precipitation 0.1 720 < th dose independent rect. 7 8
270 92.83 precipitation 0.1 720 < th dose dependent rect. 7 8
275 93.10 humidity 90.0 90 < th dose independent rect. 2 1
276 93.23 humidity 90.0 90 < th dose independent rect. 1 3
282 93.31 precipitation 0.1 720 < th dose independent rect. 15 16
283 93.31 precipitation 0.1 720 < th dose dependent rect. 15 16
284 93.44 temperature 30.0 30 < th dose independent rect. 3 23
304 94.10 atmosphere 1005.0 90 > th dose dependent rect. 1 6
306 94.20 wind 9.0 720 < th dose independent rect. 15 16
314 94.47 wind 3.0 30 < th dose dependent rect. 2 6
319 94.58 precipitation 0.1 720 < th dose independent rect. 3 16
321 94.58 precipitation 0.1 720 < th dose dependent rect. 3 16
347 94.71 atmosphere 995.0 720 > th dose independent rect. 23 16
352 94.74 temperature 20.0 30 > th dose dependent rect. 2 6
364 94.90 humidity 50.0 720 > th dose independent rect. 7 8
365 94.91 radiation 10.0 30 < th dose dependent rect. 3 23
371 95.04 atmosphere 1015.0 720 < th dose independent rect. 3 16
382 95.21 temperature 30.0 720 < th dose independent rect. 15 16
388 95.28 atmosphere 1015.0 30 < th dose independent rect. 3 23
398 95.33 precipitation 0.1 720 < th dose independent rect. 15 8
399 95.33 precipitation 0.1 720 < th dose dependent rect. 15 8
401 95.38 temperature 10.0 720 > th dose independent rect. 15 8
402 95.38 temperature 10.0 720 > th dose independent rect. 23 16
411 95.47 wind 1.0 10 > th dose independent rect. 8 22
414 95.50 humidity 50.0 720 > th dose independent rect. 3 8
415 95.50 humidity 90.0 90 < th dose independent rect. 1 20
427 95.64 temperature 10.0 720 > th dose independent rect. 3 8
428 95.64 atmosphere 995.0 720 > th dose independent rect. 3 8
429 95.64 temperature 10.0 720 > th dose independent rect. 11 16
436 95.69 temperature 25.0 270 > th dose independent rect. 23 4
445 95.75 atmosphere 995.0 720 > th dose independent rect. 15 8
451 95.80 wind 1.0 10 < th dose independent rect. 2 5
452 95.80 wind 9.0 720 < th dose independent rect. 3 8
456 95.84 humidity 90.0 90 < th dose dependent rect. 1 6
458 95.87 precipitation 0.1 720 < th dose independent rect. 11 16
459 95.87 precipitation 0.1 720 < th dose dependent rect. 11 16
461 95.89 atmosphere 995.0 720 > th dose independent rect. 11 16
465 95.90 temperature 10.0 30 > th dose dependent rect. 3 23
470 95.95 wind 1.0 10 < th dose independent rect. 6 21
471 95.96 wind 3.0 30 < th dose dependent rect. 2 11
481 96.02 wind 1.0 10 < th dose independent rect. 13 14
509 96.13 wind 1.0 10 > th dose independent rect. 21 9
517 96.23 wind 9.0 720 < th dose independent rect. 15 8
535 96.35 wind 1.0 10 > th dose independent rect. 21 23
540 96.41 radiation 10.0 30 > th dose independent rect. 6 2
553 96.41 wind 1.0 30 > th dose independent rect. 3 23
555 96.42 atmosphere 1005.0 10 > th dose independent rect. 2 6
568 96.49 radiation 20.0 720 > th dose independent rect. 15 1
573 96.51 radiation 1.0 720 > th dose dependent rect. 15 1
586 96.54 wind 1.0 10 < th dose independent rect. 8 19
635 96.69 precipitation 0.1 720 < th dose independent rect. 3 8
638 96.69 radiation 20.0 720 > th dose independent rect. 15 16
641 96.69 precipitation 0.1 720 < th dose dependent rect. 3 8
659 96.71 radiation 1.0 720 < th dose dependent rect. 21 8
666 96.75 wind 9.0 720 < th dose independent rect. 7 8
674 96.77 wind 3.0 30 < th dose dependent rect. 6 21
675 96.78 radiation 10.0 30 < th dose independent rect. 3 23
683 96.81 radiation 40.0 720 < th dose independent rect. 15 16
718 96.86 temperature 25.0 270 > th dose dependent rect. 23 7
720 96.87 temperature 25.0 1440 < th dose independent rect. 1 1
726 96.89 wind 1.0 10 > th dose independent rect. 18 12
732 96.92 atmosphere 1015.0 720 < th dose independent rect. 3 8
733 96.93 atmosphere 995.0 30 > th dose dependent rect. 3 23
736 96.95 precipitation 0.1 720 < th dose independent rect. 23 16
740 96.95 precipitation 0.1 720 < th dose dependent rect. 23 16
744 96.97 wind 1.0 14400 < th dose dependent rect. 2 1
745 96.97 temperature 25.0 720 > th dose dependent rect. 8 1
759 97.01 wind 1.0 30 < th dose independent rect. 2 10
762 97.01 wind 3.0 10 < th dose dependent rect. 22 5
767 97.03 atmosphere 995.0 720 > th dose independent rect. 9 8
779 97.08 atmosphere 995.0 720 > th dose independent rect. 5 16
781 97.08 temperature 25.0 720 > th dose dependent rect. 3 6
783 97.09 atmosphere 1000.0 720 > th dose independent rect. 21 8
784 97.09 humidity 50.0 720 > th dose independent rect. 23 16
793 97.11 temperature 25.0 720 > th dose independent rect. 8 1
795 97.12 humidity 90.0 90 < th dose independent rect. 1 17
798 97.12 radiation 20.0 720 > th dose dependent rect. 15 16
821 97.15 wind 9.0 30 < th dose dependent rect. 3 23
861 97.16 atmosphere 995.0 720 > th dose independent rect. 17 16
915 97.19 humidity 80.0 14400 < th dose dependent rect. 2 7
920 97.21 radiation 1.0 720 < th dose independent rect. 21 8
933 97.23 atmosphere 1000.0 10 > th dose independent rect. 8 18
953 97.27 wind 1.0 10 > th dose independent rect. 23 7
956 97.27 temperature 10.0 720 > th dose independent rect. 21 8
957 97.27 temperature 30.0 720 < th dose independent rect. 21 8
958 97.27 humidity 50.0 720 > th dose independent rect. 21 8
966 97.27 temperature 10.0 720 > th dose independent rect. 5 16
968 97.27 wind 1.0 30 > th dose dependent rect. 2 1
974 97.29 temperature 10.0 720 > th dose independent rect. 9 8
975 97.29 atmosphere 1015.0 720 < th dose independent rect. 9 8
977 97.29 temperature 10.0 720 > th dose independent rect. 17 16
978 97.29 humidity 70.0 720 > th dose dependent rect. 3 1