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Os12g0538700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AT.I.24-1 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.56 (0.0557) R2 : 0.664
β1 : -5.39 (0.217) R2dD : 0.559 R2D : 0.291
β2 : 2.18 (0.131) R2dC : 0.208 R2C : 0.151
β3 : -2.31 (0.186) R2dE : 0.157 R2E : -0.119
β4 : 3.65 (0.495) R2dD*C : 0.0357 R2D*C : 0.0128
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.986 (0.127) R2dN8 : 0.0689 R2N8 : -0.0663
σ : 1.02
deviance : 480.7
__
_____
C
peak time of C : 12.1
E
wheather : temperature
threshold : 19.74
memory length : 3659
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.08
open length of G : 0.894

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
474.88 1.02 9.53 -5.03 2.16 -2.4 3.67 -1.38 -0.906 12.1 19.8 3663 6.07 0.867
480.7 1.02 9.56 -5.39 2.18 -2.31 3.65 -- -0.986 12.1 19.74 3659 6.08 0.894
528.75 1.07 9.54 -5.15 2.23 -2.45 -- -0.601 -0.945 11.9 19.76 3661 6.12 0.85
528.77 1.07 9.57 -5.35 2.17 -2.48 -- -- -1.01 11.9 19.7 3662 6.13 0.817
799.08 1.32 9.57 -5.08 -- -2.22 -- -0.649 -0.867 -- 19.7 2960 6.12 0.897
650.78 1.2 9.44 -4.37 1.92 -- 3.96 -- -0.368 12 -- -- -- --
717.57 1.25 9.43 -4.22 1.91 -- -- -- -0.354 11.7 -- -- -- --
799.38 1.32 9.62 -5.44 -- -2.01 -- -- -1.06 -- 19.75 4074 6.09 0.867
1113.6 1.55 9.49 -- 2.27 -1.37 -- -- -0.337 12 19.4 2282 5.93 0.05
946.77 1.44 9.47 -4.27 -- -- -- -- -0.377 -- -- -- -- --
1186.65 1.61 9.32 -- 1.96 -- -- -- 0.116 11.8 -- -- -- --
1358.65 1.72 9.39 -- -- -1.11 -- -- -0.0265 -- 17.1 3103 5.8 0.208
1428.45 1.76 9.36 -- -- -- -- -- 0.0975 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 421.15 wind 1 14400 < th dose dependent rect. 24 2
2 421.44 wind 1 43200 > th dose independent rect. 12 1
4 424.27 wind 1 14400 < th dose independent rect. 24 2
6 426.83 wind 1 43200 < th dose independent rect. 10 3
7 426.97 wind 1 43200 < th dose independent rect. 12 1
8 428.20 wind 1 43200 < th dose dependent rect. 10 3
9 428.56 radiation 40 43200 < th dose independent rect. 13 1
14 429.40 radiation 10 43200 > th dose independent rect. 17 1
26 429.46 wind 3 14400 < th dose dependent rect. 12 1
30 430.84 wind 1 14400 > th dose independent rect. 24 2
33 432.07 atmosphere 1010 14400 < th dose independent rect. 13 1
34 432.19 atmosphere 1010 14400 > th dose independent rect. 13 1
38 432.94 radiation 30 43200 > th dose dependent rect. 13 1
41 433.54 radiation 10 43200 < th dose independent rect. 16 1
43 433.65 radiation 40 43200 < th dose independent rect. 12 20
47 433.83 radiation 40 43200 < th dose independent rect. 12 7
52 433.85 radiation 40 43200 < th dose independent rect. 12 10
58 433.87 radiation 40 43200 < th dose independent rect. 12 15
64 434.31 radiation 20 43200 < th dose independent rect. 12 19
66 434.57 radiation 20 43200 < th dose independent rect. 12 7
75 434.59 radiation 20 43200 < th dose independent rect. 12 15
114 434.96 atmosphere 1010 14400 < th dose independent rect. 16 1
115 435.11 atmosphere 1010 14400 < th dose independent rect. 13 4
119 435.30 radiation 1 43200 > th dose dependent rect. 16 15
126 435.75 radiation 40 43200 > th dose independent rect. 13 1
131 435.87 radiation 20 43200 < th dose independent sin 14 NA
133 435.89 radiation 30 43200 < th dose independent rect. 15 23
134 435.91 radiation 40 43200 < th dose independent sin 15 NA
148 436.29 radiation 30 43200 < th dose independent rect. 15 20
151 436.31 radiation 30 43200 < th dose independent rect. 9 23
160 436.52 radiation 30 43200 < th dose independent sin 20 NA
163 436.57 radiation 30 43200 < th dose independent rect. 2 15
164 436.57 radiation 30 43200 < th dose independent rect. 4 15
175 436.58 radiation 30 43200 < th dose independent rect. 5 12
213 436.58 radiation 30 43200 < th dose independent rect. 18 23
215 436.59 radiation 30 43200 < th dose independent no NA NA
216 436.59 radiation 30 43200 < th dose independent rect. 7 10
299 436.86 radiation 10 43200 < th dose independent rect. 15 3
300 436.86 radiation 30 43200 < th dose independent rect. 9 8
309 436.87 radiation 30 43200 < th dose independent rect. 9 18
358 437.34 radiation 20 43200 < th dose independent rect. 15 15
359 437.35 radiation 20 43200 < th dose independent rect. 15 7
377 437.38 radiation 20 43200 < th dose independent rect. 15 12
388 437.42 radiation 40 43200 < th dose dependent rect. 17 14
444 437.71 wind 3 14400 < th dose dependent rect. 4 11
445 437.71 radiation 40 43200 > th dose dependent rect. 12 20
488 438.00 wind 3 14400 < th dose dependent rect. 5 9
503 438.30 radiation 10 43200 > th dose dependent rect. 16 2
542 438.68 wind 1 14400 > th dose independent rect. 5 9
555 438.85 radiation 40 43200 < th dose dependent rect. 13 1
634 439.25 atmosphere 1010 14400 > th dose independent rect. 16 2
651 439.31 radiation 30 43200 < th dose independent rect. 9 1
662 439.45 humidity 80 43200 > th dose independent rect. 17 11
688 439.53 radiation 1 43200 > th dose dependent sin 13 NA
741 439.72 atmosphere 1010 14400 > th dose independent rect. 12 6
753 439.85 radiation 1 43200 > th dose dependent rect. 12 19
762 439.95 humidity 80 43200 < th dose independent rect. 16 13
787 440.05 radiation 10 43200 < th dose independent rect. 6 12
806 440.10 humidity 80 43200 < th dose independent rect. 17 11
814 440.15 wind 1 14400 < th dose independent rect. 5 10