BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0478100 Os12g0478100|AK063578
(146 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0478100 GRAM domain containing protein 270 3e-73
Os09g0466300 GRAM domain containing protein 153 4e-38
Os03g0187600 GRAM domain containing protein 141 2e-34
Os07g0621300 GRAM domain containing protein 139 5e-34
Os02g0636700 GRAM domain containing protein 131 2e-31
Os04g0526800 GRAM domain containing protein 123 6e-29
Os03g0736700 GRAM domain containing protein 119 7e-28
Os10g0489000 GRAM domain containing protein 117 3e-27
Os04g0527000 GRAM domain containing protein 117 4e-27
Os02g0636600 GRAM domain containing protein 115 1e-26
Os06g0218100 Hypothetical protein 66 1e-11
>Os12g0478100 GRAM domain containing protein
Length = 146
Score = 270 bits (690), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA
Sbjct: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
Query: 61 PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH 120
PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH
Sbjct: 61 PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH 120
Query: 121 LVQAVSSQQR 130
LVQAVSSQQR
Sbjct: 121 LVQAVSSQQR 130
>Os09g0466300 GRAM domain containing protein
Length = 192
Score = 153 bits (386), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 93/126 (73%), Gaps = 1/126 (0%)
Query: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
+EGG D++++Q F+ A DE+LRK++ACYLST+ GPV G LYL+ VAFCSD PLS+ A
Sbjct: 61 AEGGHDRIFRQAFS-APPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEA 119
Query: 61 PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH 120
G WSYYKV IP+ ++ +A P K+ P EK++ +V+VD H+FW MGFV+YD AV H
Sbjct: 120 GGGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKH 179
Query: 121 LVQAVS 126
L +A+S
Sbjct: 180 LQEALS 185
>Os03g0187600 GRAM domain containing protein
Length = 264
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 92/130 (70%), Gaps = 2/130 (1%)
Query: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
+EGG+DK++ QTF DE+L+K +ACYLST+ GPV G LYL+++ +AFCSD PL++
Sbjct: 134 AEGGYDKIFHQTF-DVLPDEKLKKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKV 192
Query: 61 PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH 120
+ WSYYKV+IP ++ + P T + + EKY+ VV+VD+H+FWFMGFV YD AV +
Sbjct: 193 -GDKDEWSYYKVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKN 251
Query: 121 LVQAVSSQQR 130
L +A+ Q
Sbjct: 252 LQEALQEAQN 261
>Os07g0621300 GRAM domain containing protein
Length = 149
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
Query: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
+EGG+DK++ QTF DE+L+K +ACYLST+ GP+ G LY++ +AFCSD P+++
Sbjct: 12 AEGGYDKVFHQTFECL-PDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFCSDSPVAYVT 70
Query: 61 PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH 120
+ S YKV++PVA++ + P +++P E+Y+ VV+VD+HDFWFMGFV+YD AV
Sbjct: 71 EDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGFVNYDGAVKS 130
Query: 121 LVQAV 125
L +AV
Sbjct: 131 LQEAV 135
>Os02g0636700 GRAM domain containing protein
Length = 232
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Query: 3 GGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAAPS 62
GG +K+++Q F+ +E+L + CYLST GP+AG L+++ VAF SDRPL+ +AP
Sbjct: 106 GGVEKVFRQWFS-VDKNEKLLRASQCYLSTTAGPIAGMLFVSTERVAFRSDRPLAVSAPG 164
Query: 63 GQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHLV 122
G YKV IP+ KV AA+P K P +KY+ VVT D +FWFMGFVSY +++HHL
Sbjct: 165 GDKVRVPYKVTIPLRKVKAAKPSENKHKPEQKYIEVVTNDGFEFWFMGFVSYHRSLHHLE 224
Query: 123 QAVSSQQR 130
QAV+ +R
Sbjct: 225 QAVAQARR 232
>Os04g0526800 GRAM domain containing protein
Length = 233
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Query: 3 GGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAAPS 62
GG ++++++ F+ A ERL K CYL T GP+AG L+++ + VAF SDRP++ +
Sbjct: 108 GGIERVFRKAFS-AEKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAK 166
Query: 63 GQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHLV 122
G A YKV++P+ ++A P + P EKY+HVVTVD +FWFMGFVSY ++ ++
Sbjct: 167 GDVARVPYKVVVPLRRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQ 226
Query: 123 QAVSSQQ 129
QA+S Q
Sbjct: 227 QAISELQ 233
>Os03g0736700 GRAM domain containing protein
Length = 247
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 90/133 (67%), Gaps = 9/133 (6%)
Query: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
+EGG D+++ Q F G E+LRK +ACYLST++GPV GTLY++ +AFCSD P+S+ A
Sbjct: 112 AEGGHDRVFTQAF-GVVPGEQLRKAYACYLSTSSGPVIGTLYISTARLAFCSDSPISYHA 170
Query: 61 PSGQTAWS--------YYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFV 112
P+ A + YKV++P+ +V + P + E+Y+ ++T D+H+FWFMGFV
Sbjct: 171 PAVAVAGAAPAHPPEAIYKVVLPLNQVKSVNPSASMTNRGERYIQIMTTDNHEFWFMGFV 230
Query: 113 SYDKAVHHLVQAV 125
SYDKA+ +L +A+
Sbjct: 231 SYDKALKNLYEAL 243
>Os10g0489000 GRAM domain containing protein
Length = 220
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 3 GGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAAPS 62
G DK+++Q F DE+L K F CYLST GP+AG L+++ +AF SDRPL +P
Sbjct: 89 GSIDKVFRQYFQ-VDKDEKLLKAFQCYLSTTAGPIAGMLFISTEKIAFHSDRPLDLTSPK 147
Query: 63 GQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHLV 122
G YKV+IP ++ +A +P EKY+ VVTVD DFWFMGF+S+ K+ +L
Sbjct: 148 GGITRVPYKVLIPAKRIKSAAVRENLYNPDEKYIDVVTVDGFDFWFMGFISHTKSFEYLQ 207
Query: 123 QA 124
+A
Sbjct: 208 RA 209
>Os04g0527000 GRAM domain containing protein
Length = 215
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Query: 3 GGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAAPS 62
GG +K++++ FA G E+L + CYLST GP+AG L+++ +AF SDR L+ PS
Sbjct: 90 GGVEKVFRRWFA-VGKGEKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPS 148
Query: 63 GQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHLV 122
G T YKV IP+ +V A+P K P +KYV VVT D +FWFMGFVS+ + +L
Sbjct: 149 GDTVRVPYKVAIPLRRVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLE 208
Query: 123 QAVSSQQ 129
AV+ Q
Sbjct: 209 LAVAQAQ 215
>Os02g0636600 GRAM domain containing protein
Length = 229
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Query: 3 GGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAAPS 62
GG +++++Q F+ A ERL K CYL T GP+AG L++++R +AF SDR L+ +P+
Sbjct: 104 GGVERVFRQAFS-AEKGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPA 162
Query: 63 GQT-AWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHL 121
G A YKV++P+ ++ P + P +KY+HV TVD +FWFMGFVSY + ++
Sbjct: 163 GDVVARVPYKVVVPLRRIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYM 222
Query: 122 VQAVS 126
Q +S
Sbjct: 223 QQVIS 227
>Os06g0218100 Hypothetical protein
Length = 69
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 43/57 (75%)
Query: 71 KVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHLVQAVSS 127
+V+IP+ ++ AA P K +P EKY+ VV+V+ H+FWFMGF+ YDKAV L +A++S
Sbjct: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNS 63
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,623,997
Number of extensions: 180992
Number of successful extensions: 393
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 11
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)