FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0478100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0529) R2 : 0.133
β1 : 0.8 (0.194) R2dD : 0.0336 R2D : 0.035
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.74 (0.675) R2dE : 0.0943 R2E : 0.0937
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.117 (0.113) R2dN8 : 0.00273 R2N8 : 0.00647
σ : 0.99
deviance : 451.78
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8
memory length : 7
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.918
open length of G : 3.23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
441.17 0.987 3.46 0.781 0.223 4.83 -1.82 -1.13 -0.109 18.7 0.8121 8 1.02 3.2
441.41 0.979 3.46 0.778 0.215 4.87 -1.81 -- -0.112 18.7 0.8087 7 1.02 3.2
446.52 0.984 3.45 0.82 0.314 4.92 -- -0.653 -0.11 15.7 0.8129 7 0.929 3.23
446.58 0.984 3.46 0.815 0.314 4.93 -- -- -0.113 15.7 0.8163 7 0.928 3.23
451.71 0.99 3.45 0.804 -- 4.74 -- -0.639 -0.116 -- 0.8 7 0.925 3.22
492.4 1.04 3.46 0.738 0.118 -- -1.68 -- -0.147 19.4 -- -- -- --
499.04 1.05 3.46 0.782 0.183 -- -- -- -0.146 16.3 -- -- -- --
451.78 0.99 3.45 0.8 -- 4.74 -- -- -0.117 -- 0.8 7 0.918 3.23
464.07 1 3.47 -- 0.294 4.89 -- -- -0.2 15.6 0.8128 7 0.712 3.42
500.85 1.05 3.46 0.775 -- -- -- -- -0.151 -- -- -- -- --
515.17 1.06 3.48 -- 0.168 -- -- -- -0.234 16.4 -- -- -- --
468.65 1.01 3.47 -- -- 4.7 -- -- -0.206 -- 0.8 7 0.713 3.42
516.69 1.06 3.48 -- -- -- -- -- -0.237 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 453.29 wind 1.0 10 < th dose dependent rect. 1 3
3 458.09 wind 3.0 720 < th dose independent rect. 2 1
4 458.35 wind 1.0 30 < th dose independent rect. 4 1
6 459.10 wind 1.0 30 < th dose dependent rect. 1 1
7 459.14 wind 1.0 10 < th dose dependent rect. 4 1
11 461.27 precipitation 0.1 10 > th dose independent rect. 3 1
15 461.27 precipitation 0.1 10 > th dose dependent rect. 3 1
19 461.55 humidity 80.0 4320 > th dose independent rect. 23 2
22 461.89 wind 5.0 720 < th dose dependent rect. 2 1
24 462.35 atmosphere 1005.0 30 > th dose dependent rect. 1 1
25 462.53 humidity 80.0 4320 < th dose dependent rect. 21 11
31 463.33 humidity 80.0 4320 > th dose independent rect. 22 10
32 463.42 humidity 80.0 4320 < th dose dependent rect. 22 1
34 463.70 wind 1.0 10 < th dose dependent rect. 15 13
46 463.79 wind 3.0 720 < th dose independent rect. 23 5
47 463.83 wind 3.0 720 > th dose independent rect. 23 5
49 463.95 humidity 80.0 4320 < th dose dependent rect. 21 4
51 464.20 wind 1.0 10 < th dose independent rect. 1 1
56 464.61 wind 1.0 10 < th dose dependent rect. 12 16
58 464.63 humidity 80.0 4320 < th dose independent rect. 21 11
127 467.91 humidity 80.0 4320 < th dose independent rect. 22 4
135 468.08 wind 3.0 1440 > th dose dependent rect. 2 2
149 468.41 wind 1.0 720 > th dose dependent rect. 23 4
151 468.42 wind 5.0 720 < th dose independent rect. 19 10
210 468.62 wind 9.0 30 < th dose dependent rect. 2 23
216 468.75 wind 1.0 10 < th dose independent rect. 3 5
244 469.31 wind 5.0 720 < th dose dependent rect. 23 6
374 471.25 wind 1.0 10 < th dose dependent rect. 3 5
396 471.56 humidity 80.0 4320 > th dose independent sin 8 NA
401 471.68 wind 1.0 4320 > th dose dependent rect. 18 10
412 471.78 wind 3.0 30 < th dose independent rect. 2 23
415 471.83 precipitation 0.1 10 < th dose independent sin 4 NA
416 471.83 precipitation 0.1 10 < th dose dependent sin 4 NA
429 471.94 humidity 80.0 4320 < th dose independent sin 8 NA
452 472.13 wind 1.0 10 < th dose independent rect. 3 9
461 472.21 wind 7.0 4320 < th dose dependent rect. 17 12
487 472.48 wind 5.0 4320 < th dose independent rect. 18 7
496 472.52 wind 5.0 720 < th dose independent rect. 17 14
533 472.81 wind 1.0 10 < th dose independent rect. 3 19
537 472.84 wind 9.0 720 < th dose dependent rect. 19 10
560 472.99 atmosphere 1005.0 30 > th dose independent rect. 1 1
572 473.09 precipitation 0.1 10 > th dose dependent sin 4 NA
587 473.18 wind 5.0 4320 > th dose independent rect. 18 7
594 473.22 precipitation 0.1 10 > th dose independent sin 4 NA
611 473.30 humidity 90.0 10 > th dose dependent rect. 4 1
619 473.36 wind 1.0 10 < th dose dependent rect. 3 19
625 473.39 wind 1.0 30 > th dose independent rect. 21 23
632 473.42 radiation 1.0 1440 < th dose dependent rect. 21 1
665 473.56 temperature 20.0 10 < th dose independent rect. 6 9
675 473.61 wind 3.0 4320 > th dose independent rect. 17 12
707 473.78 humidity 60.0 90 < th dose dependent rect. 9 1
752 473.92 wind 9.0 4320 > th dose dependent rect. 13 1
833 474.20 wind 3.0 4320 < th dose independent rect. 17 12
843 474.27 temperature 20.0 10 < th dose independent rect. 2 1
850 474.28 wind 1.0 10 < th dose dependent rect. 3 11
901 474.40 humidity 90.0 90 > th dose dependent rect. 3 1
907 474.45 precipitation 0.1 4320 < th dose independent rect. 23 2
908 474.45 precipitation 0.1 4320 < th dose dependent rect. 23 2
941 474.59 humidity 60.0 90 < th dose independent rect. 9 1
978 474.70 wind 5.0 4320 < th dose independent rect. 18 3
995 474.76 wind 5.0 720 < th dose independent sin 11 NA