Os03g0736700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAM domain containing protein.
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Os03g0736700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.54 | 0.218 | 11.7 | -0.519 | 0.665 | -0.298 | 0.115 | 0.898 | -0.0885 | 6.28 | 26.24 | 10 | -- | -- |
| 22.33 | 0.222 | 11.6 | -0.385 | 0.646 | -0.465 | 0.198 | -- | -0.0381 | 6.26 | 22.75 | 10 | -- | -- |
| 21.57 | 0.216 | 11.7 | -0.52 | 0.665 | -0.295 | -- | 0.92 | -0.0893 | 6.29 | 26.3 | 10 | -- | -- |
| 22.42 | 0.221 | 11.6 | -0.381 | 0.648 | -0.469 | -- | -- | -0.0358 | 6.31 | 22.5 | 10 | -- | -- |
| 39.54 | 0.293 | 11.7 | -0.465 | -- | 0.484 | -- | 1.9 | 0.023 | -- | 71.18 | 321 | -- | -- |
| 24.87 | 0.234 | 11.6 | -0.294 | 0.641 | -- | 0.119 | -- | 0.0189 | 6.67 | -- | -- | -- | -- |
| 24.9 | 0.234 | 11.6 | -0.292 | 0.641 | -- | -- | -- | 0.0186 | 6.7 | -- | -- | -- | -- |
| 41.93 | 0.302 | 11.6 | -0.163 | -- | 0.543 | -- | -- | 0.107 | -- | 76.78 | 378 | -- | -- |
| 25.95 | 0.239 | 11.6 | -- | 0.64 | -0.315 | -- | -- | 0.0212 | 6.47 | 22.5 | 10 | -- | -- |
| 46.36 | 0.318 | 11.6 | -0.277 | -- | -- | -- | -- | 0.0314 | -- | -- | -- | -- | -- |
| 27.15 | 0.244 | 11.6 | -- | 0.638 | -- | -- | -- | 0.0512 | 6.72 | -- | -- | -- | -- |
| 42.59 | 0.304 | 11.6 | -- | -- | 0.598 | -- | -- | 0.131 | -- | 82.06 | 384 | -- | -- |
| 48.39 | 0.325 | 11.6 | -- | -- | -- | -- | -- | 0.0621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.64 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 8 |
| 4 | 20.88 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 21 |
| 9 | 21.13 | temperature | 15 | 30 | > th | dose dependent | rect. | 15 | 21 |
| 13 | 21.20 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 19 |
| 18 | 21.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 23 | 21.35 | temperature | 25 | 10 | < th | dose dependent | sin | 7 | NA |
| 33 | 21.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 21 |
| 38 | 21.47 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 21 |
| 75 | 21.55 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 20 |
| 77 | 21.55 | temperature | 10 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 78 | 21.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 94 | 21.60 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 95 | 21.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 97 | 21.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 102 | 21.62 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 104 | 21.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 109 | 21.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 112 | 21.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 113 | 21.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 118 | 21.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 120 | 21.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 130 | 21.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 164 | 21.71 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 180 | 21.74 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 182 | 21.74 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 21 |
| 188 | 21.74 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 197 | 21.76 | wind | 7 | 30 | < th | dose independent | rect. | 12 | 16 |
| 209 | 21.77 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 22 |
| 218 | 21.78 | temperature | 20 | 30 | > th | dose independent | sin | 5 | NA |
| 223 | 21.78 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 228 | 21.79 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 249 | 21.81 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 6 |
| 352 | 21.90 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 358 | 21.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 360 | 21.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 9 |
| 381 | 21.92 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 18 |
| 392 | 21.92 | radiation | 1 | 270 | > th | dose dependent | sin | 1 | NA |
| 393 | 21.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 417 | 21.93 | humidity | 80 | 270 | < th | dose independent | rect. | 9 | 7 |
| 440 | 21.94 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 11 |
| 469 | 21.96 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 8 |
| 497 | 21.97 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 23 |
| 503 | 21.97 | temperature | 10 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 506 | 21.98 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 16 |
| 508 | 21.98 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 22 |
| 566 | 22.01 | radiation | 20 | 270 | > th | dose independent | sin | 1 | NA |
| 582 | 22.02 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 583 | 22.02 | temperature | 20 | 30 | > th | dose independent | rect. | 24 | 12 |
| 604 | 22.02 | temperature | 20 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 648 | 22.04 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 667 | 22.05 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 693 | 22.06 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 18 |
| 714 | 22.06 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 774 | 22.08 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 18 |
| 818 | 22.09 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 819 | 22.09 | wind | 7 | 10 | < th | dose independent | rect. | 4 | 8 |
| 826 | 22.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 854 | 22.10 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 871 | 22.10 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 872 | 22.10 | temperature | 10 | 10 | > th | dose dependent | rect. | 4 | 8 |
| 873 | 22.10 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 877 | 22.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 953 | 22.11 | temperature | 20 | 30 | < th | dose independent | sin | 6 | NA |