Os09g0466300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAM domain containing protein.
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Os09g0466300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 309.66 | 0.827 | 5.23 | 1.71 | 0.755 | -4.76 | 0.0977 | -7.47 | 0.415 | 11.7 | 1.659 | 11466 | -- | -- |
| 351.51 | 0.873 | 5.43 | 0.917 | 0.169 | -4.23 | -0.618 | -- | 0.114 | 11.6 | 3.482 | 10227 | -- | -- |
| 304.9 | 0.813 | 5.22 | 1.59 | 0.772 | -4.68 | -- | -7.18 | 0.394 | 11.9 | 1.936 | 12899 | -- | -- |
| 316.29 | 0.828 | 5.49 | 0.107 | 0.726 | -3.55 | -- | -- | -0.123 | 11.1 | 3.292 | 14339 | -- | -- |
| 310.81 | 0.821 | 5.35 | 1.27 | -- | -4.72 | -- | -6.05 | 0.228 | -- | 1.967 | 14596 | -- | -- |
| 626.35 | 1.17 | 5.24 | 1.43 | 0.498 | -- | -0.321 | -- | 0.998 | 11.4 | -- | -- | -- | -- |
| 626.76 | 1.17 | 5.24 | 1.42 | 0.501 | -- | -- | -- | 0.996 | 11.2 | -- | -- | -- | -- |
| 319.83 | 0.833 | 5.48 | 0.147 | -- | -3.72 | -- | -- | -0.148 | -- | 2.64 | 18939 | -- | -- |
| 315.66 | 0.827 | 5.48 | -- | 0.758 | -3.67 | -- | -- | -0.101 | 11.5 | 3.126 | 14332 | -- | -- |
| 642.44 | 1.18 | 5.25 | 1.41 | -- | -- | -- | -- | 0.992 | -- | -- | -- | -- | -- |
| 679.8 | 1.22 | 5.28 | -- | 0.489 | -- | -- | -- | 0.838 | 11 | -- | -- | -- | -- |
| 313.33 | 0.824 | 5.56 | -- | -- | -3.97 | -- | -- | -0.385 | -- | 2.698 | 18941 | -- | -- |
| 694.64 | 1.23 | 5.29 | -- | -- | -- | -- | -- | 0.836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 288.32 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 288.65 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 3 | 288.84 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 6 | 289.49 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 10 | 290.33 | temperature | 30 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 18 | 290.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 22 | 290.81 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 27 | 290.98 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 31 | 291.16 | temperature | 30 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 46 | 291.45 | temperature | 15 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 47 | 291.46 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 58 | 291.52 | temperature | 25 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 59 | 291.53 | temperature | 25 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 62 | 291.55 | temperature | 25 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 120 | 291.94 | temperature | 30 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 149 | 292.07 | temperature | 25 | 43200 | < th | dose dependent | sin | 0 | NA |
| 198 | 292.33 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 228 | 292.49 | radiation | 1 | 43200 | > th | dose independent | sin | 14 | NA |
| 245 | 292.53 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 14 |
| 269 | 292.62 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 324 | 292.88 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 336 | 292.91 | temperature | 25 | 43200 | < th | dose dependent | no | NA | NA |
| 344 | 292.93 | temperature | 25 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 359 | 292.97 | temperature | 25 | 43200 | < th | dose dependent | rect. | 9 | 23 |
| 360 | 292.97 | temperature | 25 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 402 | 293.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 582 | 293.51 | temperature | 10 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 668 | 293.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 734 | 293.74 | radiation | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 813 | 293.88 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 852 | 293.96 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 904 | 294.07 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 953 | 294.16 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 986 | 294.22 | temperature | 10 | 43200 | > th | dose dependent | rect. | 2 | 17 |