BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0466300 Os09g0466300|AK102696
(192 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0466300 GRAM domain containing protein 398 e-111
Os03g0187600 GRAM domain containing protein 247 3e-66
Os03g0736700 GRAM domain containing protein 220 5e-58
Os07g0621300 GRAM domain containing protein 197 5e-51
Os02g0636700 GRAM domain containing protein 153 8e-38
Os12g0478100 GRAM domain containing protein 152 1e-37
Os04g0526800 GRAM domain containing protein 142 1e-34
Os04g0527000 GRAM domain containing protein 139 2e-33
Os10g0489000 GRAM domain containing protein 135 2e-32
Os02g0636600 GRAM domain containing protein 129 9e-31
Os06g0218100 Hypothetical protein 82 2e-16
Os12g0559350 65 2e-11
>Os09g0466300 GRAM domain containing protein
Length = 192
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MPSSSRTETVKNALSRWARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVL 60
MPSSSRTETVKNALSRWARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVL
Sbjct: 1 MPSSSRTETVKNALSRWARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVL 60
Query: 61 AEGGHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAG 120
AEGGHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAG
Sbjct: 61 AEGGHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAG 120
Query: 121 GGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHL 180
GGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHL
Sbjct: 121 GGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHL 180
Query: 181 QEALSGFHHLQA 192
QEALSGFHHLQA
Sbjct: 181 QEALSGFHHLQA 192
>Os03g0187600 GRAM domain containing protein
Length = 264
Score = 247 bits (631), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 116/192 (60%), Positives = 147/192 (76%), Gaps = 2/192 (1%)
Query: 2 PSSSRT-ETVKNALSRWARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVL 60
P+S T +TVK+ L + +R GE RK E L+ N WQHL+T PSI +AA+GR++Q TKV+
Sbjct: 74 PASKNTMDTVKDVLGKMGKRFGEAARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVI 133
Query: 61 AEGGHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAG 120
AEGG+D+IF Q F PDE+L+K YACYLSTSAGPVMG+LYLS ++AFCSD+PL+Y+
Sbjct: 134 AEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKV- 192
Query: 121 GGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHL 180
G EWSYYKV IP +LRS +PS S+ +EK+IQ+VSVD HEFW MGFV YDSAVK+L
Sbjct: 193 GDKDEWSYYKVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNL 252
Query: 181 QEALSGFHHLQA 192
QEAL +L+A
Sbjct: 253 QEALQEAQNLRA 264
>Os03g0736700 GRAM domain containing protein
Length = 247
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/190 (54%), Positives = 139/190 (73%), Gaps = 8/190 (4%)
Query: 3 SSSRTETVKNALSRWARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAE 62
S S ++++ AL R+ R++ + TRKA D + N W HLRTAP++ +AAV R+AQGTKV AE
Sbjct: 54 SPSTCQSLRKALERYGRKLEDGTRKAADTTGNIWHHLRTAPNMADAAVARLAQGTKVYAE 113
Query: 63 GGHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSY----- 117
GGHDR+F QAF P EQLRK+YACYLSTS+GPV+G LY+STAR+AFCSDSP+SY
Sbjct: 114 GGHDRVFTQAFGVVPGEQLRKAYACYLSTSSGPVIGTLYISTARLAFCSDSPISYHAPAV 173
Query: 118 ---EAGGGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYD 174
A + YKV +PL++++S +PSAS E++IQ+++ D HEFW MGFV+YD
Sbjct: 174 AVAGAAPAHPPEAIYKVVLPLNQVKSVNPSASMTNRGERYIQIMTTDNHEFWFMGFVSYD 233
Query: 175 SAVKHLQEAL 184
A+K+L EAL
Sbjct: 234 KALKNLYEAL 243
>Os07g0621300 GRAM domain containing protein
Length = 149
Score = 197 bits (500), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 114/144 (79%), Gaps = 4/144 (2%)
Query: 50 VGRIAQGTKVLAEGGHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAF 109
+GRIAQ +KV+AEGG+D++F Q F PDE+L+K+YACYLSTS GP+MG+LY+STA++AF
Sbjct: 1 MGRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAF 60
Query: 110 CSDSPLSYEAGGGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMG 169
CSDSP++Y + S YKV +P+ +LRS +P+AS+Q PAE++IQ+VSVD H+FW MG
Sbjct: 61 CSDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG 120
Query: 170 FVNYDSAVKHLQEALSG----FHH 189
FVNYD AVK LQEA+ G HH
Sbjct: 121 FVNYDGAVKSLQEAVRGGKASLHH 144
>Os02g0636700 GRAM domain containing protein
Length = 232
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 111/166 (66%)
Query: 20 RVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDRIFRQAFSAPPDE 79
R + RK + +++ +H+ P + E G++ G ++L GG +++FRQ FS +E
Sbjct: 63 RASKYGRKGDKIAQGIKEHVTLGPKLSETVKGKLTLGARILQAGGVEKVFRQWFSVDKNE 122
Query: 80 QLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAGGGSKEWSYYKVAIPLHRLR 139
+L ++ CYLST+AGP+ G+L++ST RVAF SD PL+ A GG K YKV IPL +++
Sbjct: 123 KLLRASQCYLSTTAGPIAGMLFVSTERVAFRSDRPLAVSAPGGDKVRVPYKVTIPLRKVK 182
Query: 140 SASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALS 185
+A PS +K +P +K+I++V+ D EFW MGFV+Y ++ HL++A++
Sbjct: 183 AAKPSENKHKPEQKYIEVVTNDGFEFWFMGFVSYHRSLHHLEQAVA 228
>Os12g0478100 GRAM domain containing protein
Length = 146
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 93/126 (73%), Gaps = 1/126 (0%)
Query: 61 AEGGHDRIFRQAFS-APPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEA 119
+EGG D++++Q F+ A DE+LRK++ACYLST+ GPV G LYL+ VAFCSD PLS+ A
Sbjct: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
Query: 120 GGGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKH 179
G WSYYKV IP+ ++ +A P K+ P EK++ +V+VD H+FW MGFV+YD AV H
Sbjct: 61 PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH 120
Query: 180 LQEALS 185
L +A+S
Sbjct: 121 LVQAVS 126
>Os04g0526800 GRAM domain containing protein
Length = 233
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 104/165 (63%), Gaps = 4/165 (2%)
Query: 21 VGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDRIFRQAFSAPPDEQ 80
V + +R+A+ +H+ P + E G+++ G K+L GG +R+FR+AFSA E+
Sbjct: 70 VSKLSRRAQGFR----EHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSAEKGER 125
Query: 81 LRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAGGGSKEWSYYKVAIPLHRLRS 140
L K+ CYL T+ GP+ G+L++ST +VAF SD P++ + G YKV +PL R+
Sbjct: 126 LVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPLRRIAQ 185
Query: 141 ASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALS 185
PS + +P EK+I +V+VD EFW MGFV+Y + K++Q+A+S
Sbjct: 186 VRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAIS 230
>Os04g0527000 GRAM domain containing protein
Length = 215
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 8 ETVKNALSRWARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDR 67
E +A +R + R G R + L++ +H+ P + E G++ G ++L GG ++
Sbjct: 38 EAKSSATARTSSRFG---RTGDRLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEK 94
Query: 68 IFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAGGGSKEWS 127
+FR+ F+ E+L ++ CYLST+AGP+ G+L++ST R+AF SD L+ G
Sbjct: 95 VFRRWFAVGKGEKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGDTVRV 154
Query: 128 YYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALS 185
YKVAIPL R+++A PS +K RP +K++Q+V+ D EFW MGFV++ +K+L+ A++
Sbjct: 155 PYKVAIPLRRVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVA 212
>Os10g0489000 GRAM domain containing protein
Length = 220
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 101/164 (61%)
Query: 20 RVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDRIFRQAFSAPPDE 79
R+ + ++K + + +H+ P I + G+++ G KVL G D++FRQ F DE
Sbjct: 46 RMSKLSQKTDSYVQGFKEHITLGPKISDTLKGKLSLGAKVLQAGSIDKVFRQYFQVDKDE 105
Query: 80 QLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAGGGSKEWSYYKVAIPLHRLR 139
+L K++ CYLST+AGP+ G+L++ST ++AF SD PL + G YKV IP R++
Sbjct: 106 KLLKAFQCYLSTTAGPIAGMLFISTEKIAFHSDRPLDLTSPKGGITRVPYKVLIPAKRIK 165
Query: 140 SASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEA 183
SA+ + P EK+I +V+VD +FW MGF+++ + ++LQ A
Sbjct: 166 SAAVRENLYNPDEKYIDVVTVDGFDFWFMGFISHTKSFEYLQRA 209
>Os02g0636600 GRAM domain containing protein
Length = 229
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 8/170 (4%)
Query: 17 WARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDRIFRQAFSAP 76
W ++G + D H+ P + E G+++ G ++L GG +R+FRQAFSA
Sbjct: 65 WVNKLGRRAQGFRD-------HVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAE 117
Query: 77 PDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAGGGSKEWSY-YKVAIPL 135
E+L K+ CYL T+ GP+ G+L++S ++AF SD L+ + G YKV +PL
Sbjct: 118 KGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDVVARVPYKVVVPL 177
Query: 136 HRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALS 185
R++ PS + +P +K+I + +VD EFW MGFV+Y K++Q+ +S
Sbjct: 178 RRIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVIS 227
>Os06g0218100 Hypothetical protein
Length = 69
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 48/62 (77%)
Query: 130 KVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALSGFHH 189
+V IPLH+LR+A+PS SK PAEK+IQ+VSV+ HEFW MGF+ YD AV LQEA++
Sbjct: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSARE 66
Query: 190 LQ 191
+Q
Sbjct: 67 MQ 68
>Os12g0559350
Length = 102
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 33/37 (89%)
Query: 64 GHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGIL 100
GHDRIFRQAF+ P DEQLRKSYACYLSTSAGP + ++
Sbjct: 32 GHDRIFRQAFNTPLDEQLRKSYACYLSTSAGPRLLLI 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,121,429
Number of extensions: 289219
Number of successful extensions: 730
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 12
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)