Os04g0527000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAM domain containing protein.
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Os04g0527000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.84 | 0.836 | 8.53 | -4.5 | 3.54 | 3.2 | 2.04 | -7.32 | 0.545 | 9.63 | 26.12 | 1306 | -- | -- |
| 339.5 | 0.858 | 8.37 | -2.85 | 3.44 | 2.44 | 1.69 | -- | 0.631 | 9.26 | 24.56 | 6151 | -- | -- |
| 331.59 | 0.848 | 8.54 | -4.58 | 3.58 | 3.28 | -- | -8.39 | 0.55 | 9.6 | 26.35 | 1266 | -- | -- |
| 354.61 | 0.877 | 8.41 | -2.73 | 3.38 | 2.5 | -- | -- | 0.548 | 9.48 | 24.12 | 1409 | -- | -- |
| 1028.92 | 1.49 | 8.63 | -4.53 | -- | 2.99 | -- | -7.72 | 0.57 | -- | 26.3 | 1488 | -- | -- |
| 580.48 | 1.13 | 8.27 | -1.83 | 3.36 | -- | 1.97 | -- | 1.1 | 9.27 | -- | -- | -- | -- |
| 594.41 | 1.14 | 8.27 | -1.76 | 3.36 | -- | -- | -- | 1.1 | 9.26 | -- | -- | -- | -- |
| 1035.49 | 1.5 | 8.48 | -2.65 | -- | 2.38 | -- | -- | 0.585 | -- | 22.66 | 1489 | -- | -- |
| 512.27 | 1.05 | 8.21 | -- | 3.4 | 2.17 | -- | -- | 1.29 | 9.11 | 26.79 | 1769 | -- | -- |
| 1250.17 | 1.65 | 8.36 | -1.77 | -- | -- | -- | -- | 1.11 | -- | -- | -- | -- | -- |
| 676.06 | 1.22 | 8.22 | -- | 3.36 | -- | -- | -- | 1.29 | 9.3 | -- | -- | -- | -- |
| 1195.71 | 1.61 | 8.3 | -- | -- | 1.7 | -- | -- | 1.36 | -- | 27 | 1486 | -- | -- |
| 1333.17 | 1.7 | 8.31 | -- | -- | -- | -- | -- | 1.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 310.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 3 | 314.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 13 | 316.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 42 | 317.61 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 82 | 319.60 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 125 | 321.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 126 | 321.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 208 | 322.36 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 271 | 324.68 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 297 | 326.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 304 | 327.36 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 313 | 328.42 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 334 | 329.38 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 337 | 329.71 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 338 | 329.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 376 | 333.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 377 | 333.45 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 388 | 334.06 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 428 | 335.58 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 463 | 336.90 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 468 | 337.00 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 470 | 337.07 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 485 | 337.21 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 493 | 337.72 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 494 | 337.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 498 | 337.82 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 518 | 338.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 521 | 338.10 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 524 | 338.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 532 | 338.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 534 | 338.51 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 541 | 338.62 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 543 | 338.71 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 548 | 338.81 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 589 | 339.63 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 592 | 339.80 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 596 | 340.12 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 625 | 340.65 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 644 | 340.96 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 655 | 341.28 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 658 | 341.40 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 675 | 342.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 695 | 342.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 711 | 342.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 713 | 342.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 715 | 342.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 737 | 343.12 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 773 | 343.55 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 778 | 343.69 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 789 | 343.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 801 | 343.97 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 839 | 344.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 843 | 344.21 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 866 | 344.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 881 | 344.53 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 900 | 344.65 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 913 | 344.79 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 946 | 345.02 | radiation | 40 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 975 | 345.24 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |
| 982 | 345.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 999 | 345.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 9 |