BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0527000 Os04g0527000|AK099545
(215 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0527000 GRAM domain containing protein 402 e-113
Os02g0636700 GRAM domain containing protein 311 3e-85
Os02g0636600 GRAM domain containing protein 235 1e-62
Os04g0526800 GRAM domain containing protein 233 6e-62
Os10g0489000 GRAM domain containing protein 221 2e-58
Os09g0466300 GRAM domain containing protein 137 7e-33
Os03g0187600 GRAM domain containing protein 125 2e-29
Os07g0621300 GRAM domain containing protein 118 3e-27
Os03g0736700 GRAM domain containing protein 117 5e-27
Os12g0478100 GRAM domain containing protein 116 1e-26
>Os04g0527000 GRAM domain containing protein
Length = 215
Score = 402 bits (1034), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/215 (91%), Positives = 196/215 (91%)
Query: 1 MEKAACNEHVIGIPVSNRAFGIEEPDFPSEGXXXXXXXXXXXXXXXXXXXFGRTGDRLAQ 60
MEKAACNEHVIGIPVSNRAFGIEEPDFPSEG FGRTGDRLAQ
Sbjct: 1 MEKAACNEHVIGIPVSNRAFGIEEPDFPSEGAAAYHAEAKSSATARTSSRFGRTGDRLAQ 60
Query: 61 GIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRASQCYLSTTA 120
GIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRASQCYLSTTA
Sbjct: 61 GIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRASQCYLSTTA 120
Query: 121 GPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPLRRVKTAKPSENKHRPEQK 180
GPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPLRRVKTAKPSENKHRPEQK
Sbjct: 121 GPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPLRRVKTAKPSENKHRPEQK 180
Query: 181 YVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQAQ 215
YVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQAQ
Sbjct: 181 YVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQAQ 215
>Os02g0636700 GRAM domain containing protein
Length = 232
Score = 311 bits (796), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/231 (65%), Positives = 175/231 (75%), Gaps = 16/231 (6%)
Query: 1 MEKAACNEHVIGIPVSNRAFGIEEPDFPSEGXXX----------------XXXXXXXXXX 44
ME + +HVIGIPVSN A+GIEEPDF +E
Sbjct: 1 MEGSTSQDHVIGIPVSNTAYGIEEPDFAAEETTTPDHAGFVVGSFQFNNDANSPTTTTTT 60
Query: 45 XXXXXXFGRTGDRLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGK 104
+GR GD++AQGIKEHVTLGPKL ET+KGKLTLGARILQAGGVEKVFR+WF+V K
Sbjct: 61 TDRASKYGRKGDKIAQGIKEHVTLGPKLSETVKGKLTLGARILQAGGVEKVFRQWFSVDK 120
Query: 105 GEKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPLRR 164
EKLLRASQCYLSTTAGPIAGMLF+STER+AFRSDR LA++ P GD VRVPYKV IPLR+
Sbjct: 121 NEKLLRASQCYLSTTAGPIAGMLFVSTERVAFRSDRPLAVSAPGGDKVRVPYKVTIPLRK 180
Query: 165 VKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQAQ 215
VK AKPSENKH+PEQKY++VVT+DGFEFWFMGFVS+ +L +LE AVAQA+
Sbjct: 181 VKAAKPSENKHKPEQKYIEVVTNDGFEFWFMGFVSYHRSLHHLEQAVAQAR 231
>Os02g0636600 GRAM domain containing protein
Length = 229
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 155/229 (67%), Gaps = 17/229 (7%)
Query: 1 MEKAACNEHVIGIPVSNRAFGIEEPDFPSEGXXXXXXXXXXXXXXXXX--XXFGRTGD-- 56
M K++C HV+G+PV+++A+ IEE +G FG
Sbjct: 1 MTKSSC-AHVVGVPVTSKAYAIEEATTARDGGKKVDGDRLAVSLTHPSPYTSFGYKHSSK 59
Query: 57 -----------RLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGKG 105
R AQG ++HVTLGPKL ET++GKL+LGARILQAGGVE+VFR+ F+ KG
Sbjct: 60 LQVIHWVNKLGRRAQGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAEKG 119
Query: 106 EKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGDTV-RVPYKVAIPLRR 164
E+L++A QCYL TT GPIAGMLF+S +IAFRSDRSLA+T+P+GD V RVPYKV +PLRR
Sbjct: 120 ERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDVVARVPYKVVVPLRR 179
Query: 165 VKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQ 213
+K +PSEN +PEQKY+ V T DGFEFWFMGFVS+Q K ++ +++
Sbjct: 180 IKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISE 228
>Os04g0526800 GRAM domain containing protein
Length = 233
Score = 233 bits (595), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 155/233 (66%), Gaps = 18/233 (7%)
Query: 1 MEKAACNE-HVIGIPVSNRAFGIEEPDFPSEGXXXXXXXXXXXXXXXXX----XXFGRTG 55
M K++ N HVIG+PV+ +AFGIEE + G FG
Sbjct: 1 MRKSSINGVHVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKH 60
Query: 56 D-------------RLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAV 102
R AQG +EHVTLGPKL ET+KGKL+LGA+ILQAGG+E+VFR+ F+
Sbjct: 61 SSKGQVIHWVSKLSRRAQGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSA 120
Query: 103 GKGEKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPL 162
KGE+L++A QCYL TT GPIAGMLF+ST+++AFRSDR + +T+ GD RVPYKV +PL
Sbjct: 121 EKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPL 180
Query: 163 RRVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQAQ 215
RR+ +PSEN +PE+KY+ VVT DGFEFWFMGFVS+Q + K ++ A+++ Q
Sbjct: 181 RRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISELQ 233
>Os10g0489000 GRAM domain containing protein
Length = 220
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 140/204 (68%)
Query: 7 NEHVIGIPVSNRAFGIEEPDFPSEGXXXXXXXXXXXXXXXXXXXFGRTGDRLAQGIKEHV 66
EHVIGIP+++ A+ E+ + + + D QG KEH+
Sbjct: 6 QEHVIGIPLASFAYAEEKIERKTSRSSLVHKKGKKNSIIYRMSKLSQKTDSYVQGFKEHI 65
Query: 67 TLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRASQCYLSTTAGPIAGM 126
TLGPK+ +T+KGKL+LGA++LQAG ++KVFR++F V K EKLL+A QCYLSTTAGPIAGM
Sbjct: 66 TLGPKISDTLKGKLSLGAKVLQAGSIDKVFRQYFQVDKDEKLLKAFQCYLSTTAGPIAGM 125
Query: 127 LFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPLRRVKTAKPSENKHRPEQKYVQVVT 186
LFISTE+IAF SDR L LT+P G RVPYKV IP +R+K+A EN + P++KY+ VVT
Sbjct: 126 LFISTEKIAFHSDRPLDLTSPKGGITRVPYKVLIPAKRIKSAAVRENLYNPDEKYIDVVT 185
Query: 187 DDGFEFWFMGFVSFQVTLKNLELA 210
DGF+FWFMGF+S + + L+ A
Sbjct: 186 VDGFDFWFMGFISHTKSFEYLQRA 209
>Os09g0466300 GRAM domain containing protein
Length = 192
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 103/160 (64%)
Query: 53 RTGDRLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRAS 112
R + L++ +H+ P + E G++ G ++L GG +++FR+ F+ E+L ++
Sbjct: 26 RKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDRIFRQAFSAPPDEQLRKSY 85
Query: 113 QCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPLRRVKTAKPSE 172
CYLST+AGP+ G+L++ST R+AF SD L+ G YKVAIPL R+++A PS
Sbjct: 86 ACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAGGGSKEWSYYKVAIPLHRLRSASPSA 145
Query: 173 NKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVA 212
+K RP +K++Q+V+ D EFW MGFV++ +K+L+ A++
Sbjct: 146 SKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALS 185
>Os03g0187600 GRAM domain containing protein
Length = 264
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 97/164 (59%), Gaps = 1/164 (0%)
Query: 52 GRTGDRLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRA 111
R + L +H+ GP + + G+++ +++ GG +K+F + F V EKL +
Sbjct: 98 ARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKLKKP 157
Query: 112 SQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPLRRVKTAKPS 171
CYLST+AGP+ G+L++S +++AF SD LA D YKV IP ++++ PS
Sbjct: 158 YACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSY-YKVVIPHTQLRSVNPS 216
Query: 172 ENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQAQ 215
++ +KY+QVV+ D EFWFMGFV + +KNL+ A+ +AQ
Sbjct: 217 TSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQ 260
>Os07g0621300 GRAM domain containing protein
Length = 149
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 86/134 (64%)
Query: 78 GKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRASQCYLSTTAGPIAGMLFISTERIAFR 137
G++ ++++ GG +KVF + F EKL +A CYLST+ GPI G+L+IST +IAF
Sbjct: 2 GRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFC 61
Query: 138 SDRSLALTTPSGDTVRVPYKVAIPLRRVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGF 197
SD +A T YKV +P+ ++++ P+ ++ P ++Y+QVV+ D +FWFMGF
Sbjct: 62 SDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGF 121
Query: 198 VSFQVTLKNLELAV 211
V++ +K+L+ AV
Sbjct: 122 VNYDGAVKSLQEAV 135
>Os03g0736700 GRAM domain containing protein
Length = 247
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 8/158 (5%)
Query: 62 IKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRASQCYLSTTAG 121
I H+ P + + +L G ++ GG ++VF + F V GE+L +A CYLST++G
Sbjct: 86 IWHHLRTAPNMADAAVARLAQGTKVYAEGGHDRVFTQAFGVVPGEQLRKAYACYLSTSSG 145
Query: 122 PIAGMLFISTERIAFRSDRSLALTTPSGDTVRVP--------YKVAIPLRRVKTAKPSEN 173
P+ G L+IST R+AF SD ++ P+ YKV +PL +VK+ PS +
Sbjct: 146 PVIGTLYISTARLAFCSDSPISYHAPAVAVAGAAPAHPPEAIYKVVLPLNQVKSVNPSAS 205
Query: 174 KHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAV 211
++Y+Q++T D EFWFMGFVS+ LKNL A+
Sbjct: 206 MTNRGERYIQIMTTDNHEFWFMGFVSYDKALKNLYEAL 243
>Os12g0478100 GRAM domain containing protein
Length = 146
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Query: 90 GGVEKVFRRWFA-VGKGEKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPS 148
GG +K++++ FA G E+L + CYLST GP+AG L+++ +AF SDR L+ PS
Sbjct: 3 GGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAAPS 62
Query: 149 GDTVRVPYKVAIPLRRVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLE 208
G T YKV IP+ +V A+P K P +KYV VVT D +FWFMGFVS+ + +L
Sbjct: 63 GQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHLV 122
Query: 209 LAVAQAQ 215
AV+ Q
Sbjct: 123 QAVSSQQ 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,398,098
Number of extensions: 226536
Number of successful extensions: 429
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 10
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)