Os07g0621300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAM domain containing protein.
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Os07g0621300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.65 | 0.256 | 12.8 | 0.00137 | 0.115 | -0.816 | -0.304 | -1.25 | 0.387 | 20.1 | -1.511 | 106 | -- | -- |
| 31.59 | 0.264 | 12.8 | 0.00873 | 0.158 | -0.672 | 0.526 | -- | 0.344 | 0.93 | -1.511 | 106 | -- | -- |
| 29.82 | 0.254 | 12.8 | 0.00605 | 0.129 | -0.795 | -- | -1.09 | 0.385 | 20.5 | -2.642 | 114 | -- | -- |
| 32.22 | 0.264 | 12.8 | -0.0076 | 0.176 | -0.704 | -- | -- | 0.386 | 21.9 | 3.488 | 122 | -- | -- |
| 30.44 | 0.257 | 12.8 | 0.00662 | -- | -0.87 | -- | -1.06 | 0.383 | -- | -5.021 | 80 | -- | -- |
| 37.45 | 0.287 | 12.8 | 0.000838 | 0.526 | -- | 0.534 | -- | 0.346 | 0.231 | -- | -- | -- | -- |
| 38.68 | 0.291 | 12.8 | -0.0197 | 0.524 | -- | -- | -- | 0.344 | 0.135 | -- | -- | -- | -- |
| 32.9 | 0.267 | 12.8 | -0.0194 | -- | -0.849 | -- | -- | 0.378 | -- | -0.394 | 72 | -- | -- |
| 32.21 | 0.264 | 12.8 | -- | 0.185 | -0.694 | -- | -- | 0.381 | 22.2 | 3.9 | 122 | -- | -- |
| 55.95 | 0.35 | 12.8 | -0.0029 | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
| 38.69 | 0.291 | 12.8 | -- | 0.524 | -- | -- | -- | 0.346 | 0.133 | -- | -- | -- | -- |
| 32.91 | 0.267 | 12.8 | -- | -- | -0.848 | -- | -- | 0.38 | -- | -0.6332 | 72 | -- | -- |
| 55.95 | 0.349 | 12.8 | -- | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.25 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 15 | 29.34 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 18 | 29.35 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 16 |
| 32 | 29.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 50 | 29.60 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 81 | 29.72 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 16 |
| 104 | 29.74 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 171 | 29.84 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 173 | 29.85 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 175 | 29.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 320 | 30.00 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 345 | 30.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 363 | 30.05 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 378 | 30.09 | radiation | 40 | 90 | < th | dose dependent | sin | 1 | NA |
| 379 | 30.09 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 397 | 30.22 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 416 | 30.25 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 460 | 30.32 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 22 |
| 586 | 30.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 597 | 30.38 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 602 | 30.39 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 620 | 30.43 | radiation | 40 | 10 | < th | dose dependent | sin | 22 | NA |
| 680 | 30.49 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 8 |
| 702 | 30.52 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 714 | 30.55 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 16 |
| 729 | 30.59 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 742 | 30.59 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 767 | 30.61 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 800 | 30.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 944 | 30.68 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 20 |
| 984 | 30.73 | radiation | 1 | 10 | > th | dose dependent | sin | 22 | NA |
| 998 | 30.75 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 1000 | 30.76 | radiation | 40 | 90 | > th | dose independent | sin | 3 | NA |