BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0621300 Os07g0621300|AK071567
(149 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0621300 GRAM domain containing protein 313 2e-86
Os03g0187600 GRAM domain containing protein 209 8e-55
Os09g0466300 GRAM domain containing protein 197 3e-51
Os03g0736700 GRAM domain containing protein 172 1e-43
Os12g0478100 GRAM domain containing protein 140 3e-34
Os10g0489000 GRAM domain containing protein 124 2e-29
Os04g0526800 GRAM domain containing protein 123 4e-29
Os02g0636700 GRAM domain containing protein 119 1e-27
Os04g0527000 GRAM domain containing protein 118 1e-27
Os02g0636600 GRAM domain containing protein 113 6e-26
Os06g0218100 Hypothetical protein 82 2e-16
>Os07g0621300 GRAM domain containing protein
Length = 149
Score = 313 bits (803), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MGRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAF 60
MGRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAF
Sbjct: 1 MGRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAF 60
Query: 61 CSDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG 120
CSDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG
Sbjct: 61 CSDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG 120
Query: 121 FVNYDGAVKSLQEAVRGGKASLHHHMYFL 149
FVNYDGAVKSLQEAVRGGKASLHHHMYFL
Sbjct: 121 FVNYDGAVKSLQEAVRGGKASLHHHMYFL 149
>Os03g0187600 GRAM domain containing protein
Length = 264
Score = 209 bits (531), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 96/136 (70%), Positives = 117/136 (86%), Gaps = 1/136 (0%)
Query: 1 MGRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAF 60
MGR++QI+KVIAEGGYDK+FHQTF+ LPDEKLKK YACYLSTS GP+MGVLY+S K+AF
Sbjct: 123 MGRVSQITKVIAEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSAGPVMGVLYLSNKKLAF 182
Query: 61 CSDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG 120
CSD+P+AY D K++ S YKVV+P QLRSV P+ S+ N +E+YIQVVSVDNH+FWFMG
Sbjct: 183 CSDNPLAYKVGD-KDEWSYYKVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMG 241
Query: 121 FVNYDGAVKSLQEAVR 136
FV YD AVK+LQEA++
Sbjct: 242 FVYYDSAVKNLQEALQ 257
>Os09g0466300 GRAM domain containing protein
Length = 192
Score = 197 bits (500), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 114/144 (79%), Gaps = 4/144 (2%)
Query: 1 MGRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAF 60
+GRIAQ +KV+AEGG+D++F Q F PDE+L+K+YACYLSTS GP+MG+LY+STA++AF
Sbjct: 50 VGRIAQGTKVLAEGGHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAF 109
Query: 61 CSDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG 120
CSDSP++Y + S YKV +P+ +LRS +P+AS+Q PAE++IQ+VSVD H+FW MG
Sbjct: 110 CSDSPLSYEAGGGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMG 169
Query: 121 FVNYDGAVKSLQEAVRGGKASLHH 144
FVNYD AVK LQEA+ G HH
Sbjct: 170 FVNYDSAVKHLQEALSG----FHH 189
>Os03g0736700 GRAM domain containing protein
Length = 247
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 108/144 (75%), Gaps = 8/144 (5%)
Query: 1 MGRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAF 60
+ R+AQ +KV AEGG+D+VF Q F +P E+L+KAYACYLSTS GP++G LYISTA++AF
Sbjct: 101 VARLAQGTKVYAEGGHDRVFTQAFGVVPGEQLRKAYACYLSTSSGPVIGTLYISTARLAF 160
Query: 61 CSDSPVAY--------VTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVD 112
CSDSP++Y +IYKVV+P+ Q++SV P+AS N ERYIQ+++ D
Sbjct: 161 CSDSPISYHAPAVAVAGAAPAHPPEAIYKVVLPLNQVKSVNPSASMTNRGERYIQIMTTD 220
Query: 113 NHDFWFMGFVNYDGAVKSLQEAVR 136
NH+FWFMGFV+YD A+K+L EA++
Sbjct: 221 NHEFWFMGFVSYDKALKNLYEALQ 244
>Os12g0478100 GRAM domain containing protein
Length = 146
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 93/132 (70%), Gaps = 5/132 (3%)
Query: 12 AEGGYDKVFHQTFECL-PDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFCSDSPVAYVT 70
+EGG+DK++ QTF DE+L+K +ACYLST+ GP+ G LY++ +AFCSD P+++
Sbjct: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
Query: 71 EDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGFVNYDGAVKS 130
+ S YKV++PVA++ + P +++P E+Y+ VV+VD+HDFWFMGFV+YD AV
Sbjct: 61 PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH 120
Query: 131 LQEAV----RGG 138
L +AV RGG
Sbjct: 121 LVQAVSSQQRGG 132
>Os10g0489000 GRAM domain containing protein
Length = 220
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 85/133 (63%)
Query: 2 GRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFC 61
G+++ +KV+ G DKVF Q F+ DEKL KA+ CYLST+ GPI G+L+IST KIAF
Sbjct: 77 GKLSLGAKVLQAGSIDKVFRQYFQVDKDEKLLKAFQCYLSTTAGPIAGMLFISTEKIAFH 136
Query: 62 SDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGF 121
SD P+ + YKV++P +++S + NP E+YI VV+VD DFWFMGF
Sbjct: 137 SDRPLDLTSPKGGITRVPYKVLIPAKRIKSAAVRENLYNPDEKYIDVVTVDGFDFWFMGF 196
Query: 122 VNYDGAVKSLQEA 134
+++ + + LQ A
Sbjct: 197 ISHTKSFEYLQRA 209
>Os04g0526800 GRAM domain containing protein
Length = 233
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 85/134 (63%)
Query: 2 GRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFC 61
G+++ +K++ GG ++VF + F E+L KA CYL T+ GPI G+L++ST K+AF
Sbjct: 96 GKLSLGAKILQAGGIERVFRKAFSAEKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFR 155
Query: 62 SDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGF 121
SD PV + YKVVVP+ ++ V P+ + P E+YI VV+VD +FWFMGF
Sbjct: 156 SDRPVTVTSAKGDVARVPYKVVVPLRRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGF 215
Query: 122 VNYDGAVKSLQEAV 135
V+Y + K +Q+A+
Sbjct: 216 VSYQRSCKYMQQAI 229
>Os02g0636700 GRAM domain containing protein
Length = 232
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 87/134 (64%)
Query: 2 GRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFC 61
G++ ++++ GG +KVF Q F +EKL +A CYLST+ GPI G+L++ST ++AF
Sbjct: 94 GKLTLGARILQAGGVEKVFRQWFSVDKNEKLLRASQCYLSTTAGPIAGMLFVSTERVAFR 153
Query: 62 SDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGF 121
SD P+A YKV +P+ ++++ P+ ++ P ++YI+VV+ D +FWFMGF
Sbjct: 154 SDRPLAVSAPGGDKVRVPYKVTIPLRKVKAAKPSENKHKPEQKYIEVVTNDGFEFWFMGF 213
Query: 122 VNYDGAVKSLQEAV 135
V+Y ++ L++AV
Sbjct: 214 VSYHRSLHHLEQAV 227
>Os04g0527000 GRAM domain containing protein
Length = 215
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 86/134 (64%)
Query: 2 GRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFC 61
G++ ++++ GG +KVF + F EKL +A CYLST+ GPI G+L+IST +IAF
Sbjct: 78 GKLTLGARILQAGGVEKVFRRWFAVGKGEKLLRASQCYLSTTAGPIAGMLFISTERIAFR 137
Query: 62 SDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGF 121
SD +A T YKV +P+ ++++ P+ ++ P ++Y+QVV+ D +FWFMGF
Sbjct: 138 SDRSLALTTPSGDTVRVPYKVAIPLRRVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGF 197
Query: 122 VNYDGAVKSLQEAV 135
V++ +K+L+ AV
Sbjct: 198 VSFQVTLKNLELAV 211
>Os02g0636600 GRAM domain containing protein
Length = 229
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 2 GRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFC 61
G+++ ++++ GG ++VF Q F E+L KA CYL T+ GPI G+L++S KIAF
Sbjct: 92 GKLSLGARILQAGGVERVFRQAFSAEKGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFR 151
Query: 62 SDSPVAYVTEDNKNQSSI-YKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG 120
SD +A + + + YKVVVP+ +++ V P+ + P ++YI V +VD +FWFMG
Sbjct: 152 SDRSLAVTSPAGDVVARVPYKVVVPLRRIKRVRPSENADKPEQKYIHVATVDGFEFWFMG 211
Query: 121 FVNYDGAVKSLQEAV 135
FV+Y K +Q+ +
Sbjct: 212 FVSYQRCCKYMQQVI 226
>Os06g0218100 Hypothetical protein
Length = 69
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 47/59 (79%)
Query: 81 KVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGFVNYDGAVKSLQEAVRGGK 139
+VV+P+ QLR+ P+ S+ NPAE+YIQVVSV+ H+FWFMGF+ YD AV SLQEA+ +
Sbjct: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSAR 65
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,855,402
Number of extensions: 169304
Number of successful extensions: 411
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 11
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)