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Os04g0526800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.69 (0.0713) R2 : 0.768
β1 : -2.85 (0.435) R2dD : 0.11 R2D : -0.149
β2 : 3.32 (0.139) R2dC : 0.301 R2C : 0.189
β3 : 5.03 (0.228) R2dE : 0.429 R2E : 0.238
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.1 (1.49) R2dD*E : 0.138 R2D*E : -0.0694
γ1 : 1.4 (0.157) R2dN8 : 0.0989 R2N8 : 0.215
σ : 1.01
deviance : 472.19
__
_____
C
peak time of C : 8.33
E
wheather : temperature
threshold : 23.68
memory length : 1731
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
469.57 1.02 9.68 -2.91 3.29 5.02 0.971 -11.2 1.4 8.34 23.83 1719 13.4 --
510.86 1.05 9.44 -0.83 3.06 4.26 1.82 -- 1.79 8.48 21.76 6150 14.4 --
472.19 1.01 9.69 -2.85 3.32 5.03 -- -11.1 1.4 8.33 23.68 1731 13.7 --
514.52 1.06 9.42 -0.585 2.92 4.09 -- -- 1.86 8.64 21.9 6082 13.6 --
931.93 1.42 9.77 -2.89 -- 4.09 -- -9.62 1.51 -- 24.06 1446 14.6 --
1017.45 1.5 9.22 1.24 2.68 -- 1.05 -- 2.78 8.63 -- -- -- --
1021 1.5 9.22 1.28 2.67 -- -- -- 2.78 8.67 -- -- -- --
676.21 1.21 9.53 -0.174 -- 7.16 -- -- 1.5 -- 8.991 1148 6 --
520.81 1.06 9.39 -- 2.96 3.8 -- -- 1.98 8.68 22.2 6074 12.3 --
1424.71 1.76 9.29 1.28 -- -- -- -- 2.8 -- -- -- -- --
1063.88 1.53 9.25 -- 2.68 -- -- -- 2.64 8.64 -- -- -- --
627.57 1.17 9.48 -- -- 6.78 -- -- 1.9 -- -14.27 1316 7.62 --
1468.05 1.79 9.32 -- -- -- -- -- 2.66 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 437.94 radiation 40 14400 < th dose dependent rect. 18 6
5 440.27 radiation 40 14400 < th dose dependent rect. 18 8
8 440.63 radiation 20 14400 > th dose dependent rect. 16 15
12 441.70 radiation 30 14400 > th dose dependent rect. 15 17
15 442.19 radiation 10 14400 < th dose dependent rect. 18 11
31 443.98 radiation 30 14400 < th dose independent rect. 15 17
39 445.17 radiation 10 14400 < th dose dependent rect. 18 1
49 452.38 radiation 30 14400 < th dose independent rect. 15 9
51 452.55 radiation 30 14400 < th dose independent rect. 15 2
52 452.57 radiation 30 14400 < th dose independent rect. 15 11
63 458.54 radiation 1 14400 > th dose dependent rect. 17 13
76 460.24 radiation 1 14400 > th dose dependent rect. 17 2
87 462.83 radiation 30 14400 > th dose dependent rect. 15 1
119 466.48 radiation 1 14400 < th dose dependent rect. 18 20
125 466.86 radiation 1 14400 < th dose dependent rect. 18 18
151 468.42 radiation 1 14400 < th dose independent rect. 18 11
152 468.83 radiation 1 14400 < th dose independent rect. 18 6
153 468.83 radiation 1 14400 < th dose independent rect. 18 8
155 468.88 radiation 20 14400 < th dose dependent rect. 17 13
162 469.31 humidity 90 43200 > th dose independent rect. 22 1
166 469.85 radiation 1 14400 < th dose independent rect. 18 1
171 470.47 humidity 90 43200 > th dose dependent rect. 22 1
172 470.95 temperature 25 4320 < th dose independent rect. 6 7
177 471.72 radiation 1 14400 < th dose dependent rect. 8 21
198 473.02 humidity 90 43200 > th dose independent rect. 21 15
199 473.10 humidity 90 43200 < th dose independent rect. 17 9
210 473.91 atmosphere 1005 43200 > th dose independent rect. 16 1
224 474.34 radiation 1 14400 < th dose dependent rect. 8 15
238 474.54 radiation 1 14400 < th dose dependent rect. 8 11
244 474.63 humidity 90 43200 < th dose independent rect. 9 19
271 474.90 wind 5 43200 < th dose independent rect. 11 1
276 474.91 humidity 90 43200 > th dose dependent rect. 21 3
312 475.55 humidity 90 43200 > th dose independent rect. 8 22
313 475.55 humidity 90 43200 > th dose dependent rect. 19 6
323 475.77 temperature 25 4320 > th dose independent rect. 5 8
324 475.77 humidity 90 43200 < th dose independent rect. 18 18
327 475.78 humidity 90 43200 > th dose independent rect. 9 19
337 475.97 humidity 90 43200 > th dose independent rect. 18 8
347 476.19 radiation 1 14400 < th dose dependent rect. 13 16
356 476.33 humidity 90 43200 > th dose dependent rect. 8 22
383 476.67 humidity 90 43200 > th dose dependent rect. 15 20
392 476.75 humidity 90 43200 > th dose dependent rect. 18 18
411 476.88 atmosphere 1005 43200 < th dose independent rect. 16 1
414 476.90 radiation 1 14400 > th dose independent rect. 18 11
422 476.94 radiation 1 14400 < th dose dependent sin 14 NA
428 476.99 humidity 90 43200 < th dose independent sin 16 NA
461 477.24 temperature 25 4320 > th dose independent rect. 7 6
469 477.30 humidity 90 43200 > th dose dependent rect. 18 22
511 477.65 humidity 90 43200 > th dose independent rect. 9 2
517 477.69 wind 5 43200 > th dose independent rect. 11 1
524 477.75 humidity 90 43200 > th dose independent sin 15 NA
530 477.85 humidity 90 43200 > th dose independent sin 7 NA
542 477.91 humidity 90 43200 > th dose dependent no NA NA
549 477.97 radiation 1 14400 > th dose independent rect. 18 1
563 478.02 temperature 25 4320 > th dose independent rect. 8 4
603 478.30 humidity 90 43200 > th dose independent no NA NA
606 478.30 humidity 90 43200 > th dose dependent rect. 2 23
607 478.30 humidity 90 43200 > th dose dependent rect. 4 23
654 478.69 humidity 90 43200 > th dose independent rect. 5 23
659 478.72 humidity 90 43200 > th dose dependent sin 15 NA
679 478.95 humidity 90 43200 < th dose independent rect. 5 23
730 479.45 radiation 1 14400 < th dose dependent rect. 13 10
765 479.66 radiation 1 14400 < th dose dependent rect. 13 6
819 480.00 humidity 90 43200 < th dose independent rect. 22 1
848 480.26 humidity 90 43200 < th dose independent rect. 10 1
856 480.37 humidity 90 43200 > th dose independent rect. 2 23
865 480.46 humidity 90 43200 < th dose independent no NA NA
872 480.57 radiation 1 14400 < th dose dependent rect. 4 19
873 480.57 radiation 1 14400 < th dose dependent rect. 2 21
874 480.57 radiation 1 14400 < th dose dependent rect. 13 23
899 480.72 radiation 1 14400 < th dose dependent rect. 4 15
919 480.78 radiation 1 14400 < th dose dependent rect. 20 23
922 480.81 radiation 1 14400 < th dose dependent no NA NA
971 481.02 humidity 90 43200 < th dose independent rect. 22 23
996 481.15 humidity 90 43200 > th dose dependent sin 6 NA