BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0526800 Os04g0526800|AK061581
(233 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0526800 GRAM domain containing protein 477 e-135
Os02g0636600 GRAM domain containing protein 382 e-107
Os02g0636700 GRAM domain containing protein 246 1e-65
Os04g0527000 GRAM domain containing protein 240 5e-64
Os10g0489000 GRAM domain containing protein 229 9e-61
Os09g0466300 GRAM domain containing protein 142 2e-34
Os03g0187600 GRAM domain containing protein 130 7e-31
Os07g0621300 GRAM domain containing protein 123 1e-28
Os12g0478100 GRAM domain containing protein 122 2e-28
Os03g0736700 GRAM domain containing protein 122 2e-28
>Os04g0526800 GRAM domain containing protein
Length = 233
Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MRKSSINGVHVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKH 60
MRKSSINGVHVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKH
Sbjct: 1 MRKSSINGVHVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKH 60
Query: 61 SSKGQVIHWVSKLSRRAQGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSA 120
SSKGQVIHWVSKLSRRAQGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSA
Sbjct: 61 SSKGQVIHWVSKLSRRAQGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSA 120
Query: 121 EKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPL 180
EKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPL
Sbjct: 121 EKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPL 180
Query: 181 RRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISELQ 233
RRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISELQ
Sbjct: 181 RRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISELQ 233
>Os02g0636600 GRAM domain containing protein
Length = 229
Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/233 (80%), Positives = 205/233 (87%), Gaps = 5/233 (2%)
Query: 1 MRKSSINGVHVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKH 60
M KSS HV+GVPVT+KA+ IEE + G +K DGD LAVSL+HPSPYTSFGYKH
Sbjct: 1 MTKSSC--AHVVGVPVTSKAYAIEEATTARDGG--KKVDGDRLAVSLTHPSPYTSFGYKH 56
Query: 61 SSKGQVIHWVSKLSRRAQGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSA 120
SSK QVIHWV+KL RRAQGFR+HVTLGPKLSETV+GKLSLGA+ILQAGG+ERVFR+AFSA
Sbjct: 57 SSKLQVIHWVNKLGRRAQGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSA 116
Query: 121 EKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGD-VARVPYKVVVP 179
EKGERLVKALQCYLYTTGGPIAGMLFVS +K+AFRSDR + VTS GD VARVPYKVVVP
Sbjct: 117 EKGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDVVARVPYKVVVP 176
Query: 180 LRRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISEL 232
LRRI +VRPSENADKPE+KYIHV TVDGFEFWFMGFVSYQR CKYMQQ ISEL
Sbjct: 177 LRRIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISEL 229
>Os02g0636700 GRAM domain containing protein
Length = 232
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/222 (54%), Positives = 159/222 (71%), Gaps = 1/222 (0%)
Query: 10 HVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKHSSKGQVIHW 69
HVIG+PV+ A+GIEE A ++ + S + S ++ + +
Sbjct: 9 HVIGIPVSNTAYGIEEP-DFAAEETTTPDHAGFVVGSFQFNNDANSPTTTTTTTDRASKY 67
Query: 70 VSKLSRRAQGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSAEKGERLVKA 129
K + AQG +EHVTLGPKLSETVKGKL+LGA+ILQAGG+E+VFR+ FS +K E+L++A
Sbjct: 68 GRKGDKIAQGIKEHVTLGPKLSETVKGKLTLGARILQAGGVEKVFRQWFSVDKNEKLLRA 127
Query: 130 LQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPLRRIAQVRPS 189
QCYL TT GPIAGMLFVST++VAFRSDRP+ V++ GD RVPYKV +PLR++ +PS
Sbjct: 128 SQCYLSTTAGPIAGMLFVSTERVAFRSDRPLAVSAPGGDKVRVPYKVTIPLRKVKAAKPS 187
Query: 190 ENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISE 231
EN KPE+KYI VVT DGFEFWFMGFVSY RS +++QA+++
Sbjct: 188 ENKHKPEQKYIEVVTNDGFEFWFMGFVSYHRSLHHLEQAVAQ 229
>Os04g0527000 GRAM domain containing protein
Length = 215
Score = 240 bits (613), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 162/233 (69%), Gaps = 18/233 (7%)
Query: 1 MRKSSINGVHVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKH 60
M K++ N HVIG+PV+ +AFGIEE + G + A+ A + + + FG
Sbjct: 1 MEKAACNE-HVIGIPVSNRAFGIEEPDFPSEGAAAYHAEAKSSATARTS----SRFGRTG 55
Query: 61 SSKGQVIHWVSKLSRRAQGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSA 120
R AQG +EHVTLGPKL ET+KGKL+LGA+ILQAGG+E+VFR+ F+
Sbjct: 56 D-------------RLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAV 102
Query: 121 EKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPL 180
KGE+L++A QCYL TT GPIAGMLF+ST+++AFRSDR + +T+ GD RVPYKV +PL
Sbjct: 103 GKGEKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPL 162
Query: 181 RRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISELQ 233
RR+ +PSEN +PE+KY+ VVT DGFEFWFMGFVS+Q + K ++ A+++ Q
Sbjct: 163 RRVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQAQ 215
>Os10g0489000 GRAM domain containing protein
Length = 220
Score = 229 bits (585), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/223 (51%), Positives = 156/223 (69%), Gaps = 25/223 (11%)
Query: 10 HVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKHSSKGQVIHW 69
HVIG+P+ + A+ EE++ +S SL H K K +I+
Sbjct: 8 HVIGIPLASFAYA-EEKIERKTSRS-----------SLVH---------KKGKKNSIIYR 46
Query: 70 VSKLSRRA----QGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSAEKGER 125
+SKLS++ QGF+EH+TLGPK+S+T+KGKLSLGAK+LQAG I++VFR+ F +K E+
Sbjct: 47 MSKLSQKTDSYVQGFKEHITLGPKISDTLKGKLSLGAKVLQAGSIDKVFRQYFQVDKDEK 106
Query: 126 LVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPLRRIAQ 185
L+KA QCYL TT GPIAGMLF+ST+K+AF SDRP+ +TS KG + RVPYKV++P +RI
Sbjct: 107 LLKAFQCYLSTTAGPIAGMLFISTEKIAFHSDRPLDLTSPKGGITRVPYKVLIPAKRIKS 166
Query: 186 VRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQA 228
EN P+EKYI VVTVDGF+FWFMGF+S+ +S +Y+Q+A
Sbjct: 167 AAVRENLYNPDEKYIDVVTVDGFDFWFMGFISHTKSFEYLQRA 209
>Os09g0466300 GRAM domain containing protein
Length = 192
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 104/165 (63%), Gaps = 4/165 (2%)
Query: 70 VSKLSRRAQGFR----EHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSAEKGER 125
V + +R+A+ +H+ P + E G+++ G K+L GG +R+FR+AFSA E+
Sbjct: 21 VGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDRIFRQAFSAPPDEQ 80
Query: 126 LVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPLRRIAQ 185
L K+ CYL T+ GP+ G+L++ST +VAF SD P++ + G YKV +PL R+
Sbjct: 81 LRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAGGGSKEWSYYKVAIPLHRLRS 140
Query: 186 VRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAIS 230
PS + +P EK+I +V+VD EFW MGFV+Y + K++Q+A+S
Sbjct: 141 ASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALS 185
>Os03g0187600 GRAM domain containing protein
Length = 264
Score = 130 bits (327), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 79 GFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSAEKGERLVKALQCYLYTTG 138
F +H+ GP +++ G++S K++ GG +++F + F E+L K CYL T+
Sbjct: 107 NFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSA 166
Query: 139 GPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPLRRIAQVRPSENADKPEEK 198
GP+ G+L++S KK+AF SD P+ D YKVV+P ++ V PS + EK
Sbjct: 167 GPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSY-YKVVIPHTQLRSVNPSTSRTNASEK 225
Query: 199 YIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISELQ 233
YI VV+VD EFWFMGFV Y + K +Q+A+ E Q
Sbjct: 226 YIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQ 260
>Os07g0621300 GRAM domain containing protein
Length = 149
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 85/134 (63%)
Query: 96 GKLSLGAKILQAGGIERVFRKAFSAEKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFR 155
G+++ +K++ GG ++VF + F E+L KA CYL T+ GPI G+L++ST K+AF
Sbjct: 2 GRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFC 61
Query: 156 SDRPVTVTSAKGDVARVPYKVVVPLRRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGF 215
SD PV + YKVVVP+ ++ V P+ + P E+YI VV+VD +FWFMGF
Sbjct: 62 SDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGF 121
Query: 216 VSYQRSCKYMQQAI 229
V+Y + K +Q+A+
Sbjct: 122 VNYDGAVKSLQEAV 135
>Os12g0478100 GRAM domain containing protein
Length = 146
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Query: 108 GGIERVFRKAFS-AEKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAK 166
GG ++++++ F+ A ERL K CYL T GP+AG L+++ + VAF SDRP++ +
Sbjct: 3 GGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAAPS 62
Query: 167 GDVARVPYKVVVPLRRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQ 226
G A YKV++P+ ++A P + P EKY+HVVTVD +FWFMGFVSY ++ ++
Sbjct: 63 GQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHLV 122
Query: 227 QAISELQ 233
QA+S Q
Sbjct: 123 QAVSSQQ 129
>Os03g0736700 GRAM domain containing protein
Length = 247
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 8/155 (5%)
Query: 83 HVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSAEKGERLVKALQCYLYTTGGPIA 142
H+ P +++ +L+ G K+ GG +RVF +AF GE+L KA CYL T+ GP+
Sbjct: 89 HLRTAPNMADAAVARLAQGTKVYAEGGHDRVFTQAFGVVPGEQLRKAYACYLSTSSGPVI 148
Query: 143 GMLFVSTKKVAFRSDRPVTVTSAKGDVARVP--------YKVVVPLRRIAQVRPSENADK 194
G L++ST ++AF SD P++ + VA YKVV+PL ++ V PS +
Sbjct: 149 GTLYISTARLAFCSDSPISYHAPAVAVAGAAPAHPPEAIYKVVLPLNQVKSVNPSASMTN 208
Query: 195 PEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAI 229
E+YI ++T D EFWFMGFVSY ++ K + +A+
Sbjct: 209 RGERYIQIMTTDNHEFWFMGFVSYDKALKNLYEAL 243
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,395,032
Number of extensions: 293245
Number of successful extensions: 622
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 10
Length of query: 233
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 135
Effective length of database: 11,918,829
Effective search space: 1609041915
Effective search space used: 1609041915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)