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Os03g0187600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0159) R2 : 0.0624
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.185 (0.0335) R2dN8 : 0.0806 R2N8 : 0.0624
σ : 0.3
deviance : 41.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.7 0.269 12.8 0.0215 0.186 0.323 0.27 2.21 -0.232 2.8 0.08336 4325 -- --
33.56 0.27 12.8 0.0314 0.196 0.626 0.321 -- -0.261 2.24 0.3359 2213 -- --
32.94 0.267 12.8 0.0173 0.182 0.316 -- 2.19 -0.232 2.66 0.08765 4325 -- --
33.76 0.271 12.7 0.0192 0.188 0.602 -- -- -0.243 2.31 0.1751 2140 -- --
34.96 0.275 12.8 0.0187 -- 0.322 -- 2.13 -0.229 -- 0.2564 4325 -- --
38.68 0.292 12.7 -0.153 0.178 -- 0.181 -- -0.205 2.57 -- -- -- --
38.79 0.292 12.7 -0.157 0.179 -- -- -- -0.206 2.5 -- -- -- --
35.95 0.279 12.7 0.0255 -- 0.587 -- -- -0.237 -- 0.2386 2140 -- --
33.77 0.271 12.7 -- 0.193 0.596 -- -- -0.243 2.3 0.07478 2140 -- --
40.67 0.298 12.7 -0.15 -- -- -- -- -0.201 -- -- -- -- --
39.45 0.294 12.7 -- 0.175 -- -- -- -0.188 2.49 -- -- -- --
35.96 0.279 12.7 -- -- 0.574 -- -- -0.239 -- 0.2117 2140 -- --
41.26 0.3 12.7 -- -- -- -- -- -0.185 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.10 humidity 80.0 1440 < th dose independent rect. 11 1
2 31.22 precipitation 0.1 4320 > th dose dependent rect. 19 4
6 31.27 humidity 80.0 1440 > th dose independent rect. 11 1
13 31.53 precipitation 0.1 4320 < th dose independent rect. 18 4
14 31.53 precipitation 0.1 4320 < th dose dependent rect. 18 4
15 31.56 precipitation 0.1 4320 > th dose independent rect. 18 4
17 31.62 radiation 1.0 4320 < th dose dependent rect. 16 1
19 31.69 radiation 1.0 1440 < th dose independent rect. 6 11
22 31.71 radiation 1.0 1440 > th dose independent rect. 6 11
24 31.79 radiation 1.0 1440 < th dose dependent rect. 6 11
25 31.81 precipitation 0.1 4320 > th dose dependent rect. 19 19
37 31.92 precipitation 0.1 4320 < th dose independent rect. 19 2
40 31.92 precipitation 0.1 14400 > th dose dependent rect. 13 2
41 31.92 precipitation 0.1 4320 < th dose dependent rect. 19 2
45 31.93 precipitation 0.1 4320 > th dose independent rect. 19 2
49 31.97 humidity 70.0 1440 > th dose dependent rect. 11 1
50 32.00 precipitation 0.1 4320 > th dose independent rect. 18 23
51 32.00 precipitation 0.1 4320 < th dose independent rect. 18 23
54 32.00 precipitation 0.1 4320 < th dose dependent rect. 18 23
55 32.01 precipitation 0.1 14400 > th dose independent rect. 13 2
56 32.01 precipitation 0.1 4320 < th dose independent rect. 18 20
57 32.01 precipitation 0.1 4320 < th dose dependent rect. 18 20
58 32.03 precipitation 0.1 4320 > th dose independent rect. 18 20
62 32.05 precipitation 0.1 14400 < th dose independent rect. 13 2
63 32.05 precipitation 0.1 14400 < th dose dependent rect. 13 2
66 32.06 precipitation 0.1 14400 > th dose dependent rect. 11 4
74 32.09 precipitation 0.1 4320 > th dose dependent rect. 19 14
78 32.10 precipitation 0.1 4320 > th dose dependent rect. 19 17
101 32.18 precipitation 0.1 4320 > th dose dependent rect. 8 6
102 32.19 radiation 1.0 1440 > th dose independent rect. 18 23
107 32.20 radiation 1.0 1440 < th dose independent rect. 18 23
119 32.22 precipitation 0.1 4320 < th dose independent rect. 18 15
121 32.22 precipitation 0.1 4320 < th dose dependent rect. 18 15
122 32.23 radiation 1.0 4320 > th dose independent rect. 16 1
133 32.24 radiation 1.0 4320 < th dose independent rect. 16 1
135 32.24 precipitation 0.1 4320 > th dose independent rect. 18 15
146 32.27 precipitation 0.1 4320 > th dose independent rect. 18 12
147 32.27 precipitation 0.1 4320 < th dose independent rect. 18 12
152 32.27 precipitation 0.1 4320 < th dose dependent rect. 18 12
187 32.38 humidity 90.0 720 > th dose dependent rect. 7 16
190 32.40 precipitation 0.1 14400 < th dose independent rect. 11 4
192 32.40 precipitation 0.1 14400 < th dose dependent rect. 11 4
208 32.49 radiation 1.0 1440 > th dose independent rect. 7 7
213 32.50 precipitation 0.1 4320 > th dose independent rect. 3 21
214 32.50 precipitation 0.1 4320 < th dose independent rect. 3 21
216 32.50 radiation 1.0 1440 < th dose dependent rect. 7 7
218 32.50 precipitation 0.1 4320 < th dose dependent rect. 3 21
219 32.51 precipitation 0.1 4320 > th dose independent sin 14 NA
224 32.52 precipitation 0.1 4320 < th dose independent sin 14 NA
226 32.52 precipitation 0.1 4320 < th dose dependent sin 14 NA
230 32.53 radiation 1.0 1440 < th dose independent rect. 7 7
233 32.54 radiation 1.0 1440 > th dose independent sin 2 NA
243 32.56 radiation 1.0 1440 < th dose independent sin 2 NA
248 32.57 precipitation 0.1 1440 < th dose independent rect. 22 16
251 32.57 radiation 1.0 1440 < th dose dependent rect. 1 16
252 32.57 precipitation 0.1 1440 < th dose dependent rect. 22 16
256 32.58 radiation 1.0 1440 < th dose dependent rect. 4 13
286 32.61 precipitation 0.1 4320 < th dose independent rect. 16 22
292 32.61 precipitation 0.1 4320 < th dose dependent rect. 16 22
294 32.62 precipitation 0.1 1440 > th dose independent rect. 21 17
299 32.62 precipitation 0.1 4320 > th dose independent rect. 16 22
300 32.62 precipitation 0.1 4320 < th dose independent rect. 11 22
303 32.62 precipitation 0.1 4320 < th dose dependent rect. 11 22
309 32.63 precipitation 0.1 4320 > th dose independent rect. 11 22
320 32.64 precipitation 0.1 4320 > th dose independent rect. 11 19
322 32.64 precipitation 0.1 4320 > th dose independent rect. 13 20
323 32.64 precipitation 0.1 4320 < th dose independent rect. 13 20
327 32.64 humidity 70.0 1440 > th dose dependent rect. 8 5
332 32.64 precipitation 0.1 4320 < th dose dependent rect. 13 20
336 32.65 precipitation 0.1 4320 < th dose independent rect. 11 19
351 32.65 precipitation 0.1 4320 < th dose dependent rect. 11 19
361 32.66 precipitation 0.1 4320 > th dose independent rect. 11 17
362 32.66 precipitation 0.1 4320 > th dose independent rect. 13 17
363 32.66 precipitation 0.1 4320 < th dose independent rect. 11 17
369 32.66 precipitation 0.1 4320 < th dose dependent rect. 11 17
372 32.67 wind 1.0 4320 > th dose independent rect. 18 2
374 32.67 precipitation 0.1 4320 > th dose independent rect. 13 15
382 32.67 precipitation 0.1 4320 > th dose independent rect. 7 21
385 32.67 precipitation 0.1 4320 < th dose independent rect. 7 21
397 32.67 precipitation 0.1 4320 < th dose dependent rect. 7 21
404 32.68 precipitation 0.1 4320 < th dose independent rect. 13 17
421 32.68 precipitation 0.1 4320 < th dose dependent rect. 13 17
430 32.69 precipitation 0.1 4320 < th dose independent rect. 13 15
449 32.69 precipitation 0.1 4320 < th dose dependent rect. 13 15
459 32.70 precipitation 0.1 4320 > th dose independent no NA NA
460 32.70 precipitation 0.1 4320 < th dose independent no NA NA
461 32.70 precipitation 0.1 4320 > th dose independent rect. 13 11
462 32.70 precipitation 0.1 4320 < th dose independent rect. 13 11
483 32.70 precipitation 0.1 4320 < th dose dependent no NA NA
484 32.70 precipitation 0.1 4320 < th dose dependent rect. 13 11
498 32.71 precipitation 0.1 4320 > th dose independent rect. 11 13
499 32.71 precipitation 0.1 4320 < th dose independent rect. 11 13
502 32.71 precipitation 0.1 4320 < th dose independent rect. 7 17
517 32.71 precipitation 0.1 4320 < th dose dependent rect. 11 13
518 32.71 precipitation 0.1 4320 < th dose dependent rect. 7 17
531 32.72 precipitation 0.1 4320 < th dose independent rect. 8 6
536 32.72 precipitation 0.1 4320 > th dose independent rect. 7 17
550 32.72 precipitation 0.1 4320 < th dose dependent rect. 8 6
584 32.74 wind 1.0 4320 > th dose independent rect. 16 3
611 32.75 precipitation 0.1 4320 > th dose independent rect. 8 6
657 32.77 precipitation 0.1 1440 > th dose independent sin 8 NA
671 32.78 precipitation 0.1 1440 < th dose independent sin 8 NA
687 32.78 precipitation 0.1 1440 < th dose dependent sin 8 NA
781 32.85 precipitation 0.1 4320 < th dose independent rect. 16 17
785 32.85 precipitation 0.1 4320 < th dose dependent rect. 16 17
791 32.86 precipitation 0.1 4320 > th dose independent rect. 16 17
806 32.88 precipitation 0.1 4320 > th dose independent rect. 16 14
820 32.89 wind 1.0 4320 < th dose independent rect. 18 2
824 32.89 precipitation 0.1 1440 > th dose independent rect. 21 14
825 32.89 precipitation 0.1 4320 < th dose independent rect. 16 14
832 32.89 precipitation 0.1 4320 < th dose dependent rect. 16 14
884 32.92 precipitation 0.1 4320 > th dose dependent sin 11 NA
896 32.93 radiation 1.0 1440 < th dose dependent sin 2 NA
899 32.94 precipitation 0.1 4320 > th dose independent rect. 16 8
900 32.94 precipitation 0.1 4320 < th dose independent rect. 16 8
905 32.94 precipitation 0.1 4320 < th dose dependent rect. 16 8
910 32.95 precipitation 0.1 4320 > th dose independent rect. 16 12
916 32.96 precipitation 0.1 4320 < th dose independent rect. 16 12
926 32.96 precipitation 0.1 4320 < th dose dependent rect. 16 12