BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0187600 Os03g0187600|AK068057
(264 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0187600 GRAM domain containing protein 436 e-123
Os09g0466300 GRAM domain containing protein 249 2e-66
Os03g0736700 GRAM domain containing protein 219 2e-57
Os07g0621300 GRAM domain containing protein 209 2e-54
Os12g0478100 GRAM domain containing protein 142 3e-34
Os02g0636700 GRAM domain containing protein 130 7e-31
Os10g0489000 GRAM domain containing protein 130 1e-30
Os04g0526800 GRAM domain containing protein 129 2e-30
Os04g0527000 GRAM domain containing protein 127 1e-29
Os02g0636600 GRAM domain containing protein 127 1e-29
Os06g0218100 Hypothetical protein 86 2e-17
>Os03g0187600 GRAM domain containing protein
Length = 264
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/230 (91%), Positives = 211/230 (91%)
Query: 35 RLSPEDVXXXXXXXXXXXXXXXXXXXGNPYVSSPAGGVAPASKNTMDTVKDVLGKMGKRF 94
RLSPEDV GNPYVSSPAGGVAPASKNTMDTVKDVLGKMGKRF
Sbjct: 35 RLSPEDVAPPPPPSYHAAASSAPPYSGNPYVSSPAGGVAPASKNTMDTVKDVLGKMGKRF 94
Query: 95 GEAARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKL 154
GEAARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKL
Sbjct: 95 GEAARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKL 154
Query: 155 KKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSYYKVVIPHTQLRSVN 214
KKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSYYKVVIPHTQLRSVN
Sbjct: 155 KKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSYYKVVIPHTQLRSVN 214
Query: 215 PSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQNLRA 264
PSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQNLRA
Sbjct: 215 PSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQNLRA 264
>Os09g0466300 GRAM domain containing protein
Length = 192
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 116/192 (60%), Positives = 147/192 (76%), Gaps = 2/192 (1%)
Query: 74 PASKNTMDTVKDVLGKMGKRFGEAARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVI 133
P+S T +TVK+ L + +R GE RK E L+ N WQHL+T PSI +AA+GR++Q TKV+
Sbjct: 2 PSSSRT-ETVKNALSRWARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVL 60
Query: 134 AEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKV- 192
AEGG+D+IF Q F PDE+L+K YACYLSTSAGPVMG+LYLS ++AFCSD+PL+Y+
Sbjct: 61 AEGGHDRIFRQAFSAPPDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEAG 120
Query: 193 GDKDEWSYYKVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNL 252
G EWSYYKV IP +LRS +PS S+ +EK+IQ+VSVD HEFW MGFV YDSAVK+L
Sbjct: 121 GGSKEWSYYKVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHL 180
Query: 253 QEALQEAQNLRA 264
QEAL +L+A
Sbjct: 181 QEALSGFHHLQA 192
>Os03g0736700 GRAM domain containing protein
Length = 247
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 142/208 (68%), Gaps = 14/208 (6%)
Query: 61 GNPYV-SSPAGGVAPASKNTMDTVKDVLGKMGKRFGEAARKTETLTGNFWQHLKTGPSIT 119
GNPYV +PA AS +T +++ L + G++ + RK TGN W HL+T P++
Sbjct: 42 GNPYVIVTPAS----ASPSTCQSLRKALERYGRKLEDGTRKAADTTGNIWHHLRTAPNMA 97
Query: 120 DAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSAGPVMGVLYLSNKK 179
DAA+ R++Q TKV AEGG+D++F Q F V+P E+L+K YACYLSTS+GPV+G LY+S +
Sbjct: 98 DAAVARLAQGTKVYAEGGHDRVFTQAFGVVPGEQLRKAYACYLSTSSGPVIGTLYISTAR 157
Query: 180 LAFCSDNPLAY---------KVGDKDEWSYYKVVIPHTQLRSVNPSTSRTNASEKYIQVV 230
LAFCSD+P++Y + YKVV+P Q++SVNPS S TN E+YIQ++
Sbjct: 158 LAFCSDSPISYHAPAVAVAGAAPAHPPEAIYKVVLPLNQVKSVNPSASMTNRGERYIQIM 217
Query: 231 SVDNHEFWFMGFVYYDSAVKNLQEALQE 258
+ DNHEFWFMGFV YD A+KNL EALQ
Sbjct: 218 TTDNHEFWFMGFVSYDKALKNLYEALQR 245
>Os07g0621300 GRAM domain containing protein
Length = 149
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/136 (70%), Positives = 117/136 (86%), Gaps = 1/136 (0%)
Query: 123 MGRVSQITKVIAEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSAGPVMGVLYLSNKKLAF 182
MGR++QI+KVIAEGGYDK+FHQTF+ LPDEKLKK YACYLSTS GP+MGVLY+S K+AF
Sbjct: 1 MGRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAF 60
Query: 183 CSDNPLAYKVGD-KDEWSYYKVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMG 241
CSD+P+AY D K++ S YKVV+P QLRSV P+ S+ N +E+YIQVVSVDNH+FWFMG
Sbjct: 61 CSDSPVAYVTEDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG 120
Query: 242 FVYYDSAVKNLQEALQ 257
FV YD AVK+LQEA++
Sbjct: 121 FVNYDGAVKSLQEAVR 136
>Os12g0478100 GRAM domain containing protein
Length = 146
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 92/130 (70%), Gaps = 2/130 (1%)
Query: 134 AEGGYDKIFHQTF-DVLPDEKLKKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKV 192
+EGG+DK++ QTF DE+L+K +ACYLST+ GPV G LYL+++ +AFCSD PL++
Sbjct: 1 SEGGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAA 60
Query: 193 -GDKDEWSYYKVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKN 251
+ WSYYKV+IP ++ + P T + + EKY+ VV+VD+H+FWFMGFV YD AV +
Sbjct: 61 PSGQTAWSYYKVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHH 120
Query: 252 LQEALQEAQN 261
L +A+ Q
Sbjct: 121 LVQAVSSQQR 130
>Os02g0636700 GRAM domain containing protein
Length = 232
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 105/169 (62%), Gaps = 1/169 (0%)
Query: 93 RFGEAARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDE 152
R + RK + + +H+ GP +++ G+++ +++ GG +K+F Q F V +E
Sbjct: 63 RASKYGRKGDKIAQGIKEHVTLGPKLSETVKGKLTLGARILQAGGVEKVFRQWFSVDKNE 122
Query: 153 KLKKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSY-YKVVIPHTQLR 211
KL + CYLST+AGP+ G+L++S +++AF SD PLA D+ YKV IP +++
Sbjct: 123 KLLRASQCYLSTTAGPIAGMLFVSTERVAFRSDRPLAVSAPGGDKVRVPYKVTIPLRKVK 182
Query: 212 SVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQ 260
+ PS ++ +KYI+VV+ D EFWFMGFV Y ++ +L++A+ +A+
Sbjct: 183 AAKPSENKHKPEQKYIEVVTNDGFEFWFMGFVSYHRSLHHLEQAVAQAR 231
>Os10g0489000 GRAM domain containing protein
Length = 220
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 3/165 (1%)
Query: 93 RFGEAARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDE 152
R + ++KT++ F +H+ GP I+D G++S KV+ G DK+F Q F V DE
Sbjct: 46 RMSKLSQKTDSYVQGFKEHITLGPKISDTLKGKLSLGAKVLQAGSIDKVFRQYFQVDKDE 105
Query: 153 KLKKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSY--YKVVIPHTQL 210
KL K + CYLST+AGP+ G+L++S +K+AF SD PL K + YKV+IP ++
Sbjct: 106 KLLKAFQCYLSTTAGPIAGMLFISTEKIAFHSDRPLDL-TSPKGGITRVPYKVLIPAKRI 164
Query: 211 RSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEA 255
+S + N EKYI VV+VD +FWFMGF+ + + + LQ A
Sbjct: 165 KSAAVRENLYNPDEKYIDVVTVDGFDFWFMGFISHTKSFEYLQRA 209
>Os04g0526800 GRAM domain containing protein
Length = 233
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 107 NFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSA 166
F +H+ GP +++ G++S K++ GG +++F + F E+L K CYL T+
Sbjct: 79 GFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSAEKGERLVKALQCYLYTTG 138
Query: 167 GPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSY-YKVVIPHTQLRSVNPSTSRTNASEK 225
GP+ G+L++S KK+AF SD P+ D YKVV+P ++ V PS + EK
Sbjct: 139 GPIAGMLFVSTKKVAFRSDRPVTVTSAKGDVARVPYKVVVPLRRIAQVRPSENADKPEEK 198
Query: 226 YIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQ 260
YI VV+VD EFWFMGFV Y + K +Q+A+ E Q
Sbjct: 199 YIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISELQ 233
>Os04g0527000 GRAM domain containing protein
Length = 215
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 89 KMGKRFGEAARKTETLTGNFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDV 148
+ RFG R + L +H+ GP + + G+++ +++ GG +K+F + F V
Sbjct: 46 RTSSRFG---RTGDRLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAV 102
Query: 149 LPDEKLKKPYACYLSTSAGPVMGVLYLSNKKLAFCSDNPLAYKVGDKDEWSY-YKVVIPH 207
EKL + CYLST+AGP+ G+L++S +++AF SD LA D YKV IP
Sbjct: 103 GKGEKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGDTVRVPYKVAIPL 162
Query: 208 TQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQ 260
++++ PS ++ +KY+QVV+ D EFWFMGFV + +KNL+ A+ +AQ
Sbjct: 163 RRVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQAQ 215
>Os02g0636600 GRAM domain containing protein
Length = 229
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 107 NFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSA 166
F H+ GP +++ G++S +++ GG +++F Q F E+L K CYL T+
Sbjct: 75 GFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAEKGERLVKALQCYLYTTG 134
Query: 167 GPVMGVLYLSNKKLAFCSDNPLAYK--VGDKDEWSYYKVVIPHTQLRSVNPSTSRTNASE 224
GP+ G+L++SN+K+AF SD LA GD YKVV+P +++ V PS + +
Sbjct: 135 GPIAGMLFVSNRKIAFRSDRSLAVTSPAGDVVARVPYKVVVPLRRIKRVRPSENADKPEQ 194
Query: 225 KYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQE 258
KYI V +VD EFWFMGFV Y K +Q+ + E
Sbjct: 195 KYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISE 228
>Os06g0218100 Hypothetical protein
Length = 69
Score = 86.3 bits (212), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 49/62 (79%)
Query: 202 KVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQN 261
+VVIP QLR+ NPS S+ N +EKYIQVVSV+ HEFWFMGF+ YD AV +LQEA+ A+
Sbjct: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSARE 66
Query: 262 LR 263
++
Sbjct: 67 MQ 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,091,998
Number of extensions: 273547
Number of successful extensions: 624
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 11
Length of query: 264
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 165
Effective length of database: 11,866,615
Effective search space: 1957991475
Effective search space used: 1957991475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)