Os06g0218100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0218100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.04 | 0.2 | 13 | -0.159 | 0.399 | -0.514 | 0.155 | 0.0398 | 0.117 | 2.4 | 24.96 | 123 | -- | -- |
| 18.04 | 0.198 | 13 | -0.163 | 0.399 | -0.512 | 0.149 | -- | 0.116 | 2.4 | 24.96 | 122 | -- | -- |
| 18.11 | 0.198 | 13 | -0.185 | 0.399 | -0.505 | -- | -0.154 | 0.111 | 2.42 | 24.9 | 121 | -- | -- |
| 18.12 | 0.198 | 13 | -0.167 | 0.397 | -0.518 | -- | -- | 0.115 | 2.41 | 24.95 | 122 | -- | -- |
| 23.87 | 0.229 | 13 | -0.0866 | -- | -0.904 | -- | 0.16 | 0.171 | -- | 24.7 | 85 | -- | -- |
| 22.16 | 0.221 | 13 | -0.244 | 0.601 | -- | 0.306 | -- | 0.0767 | 2.93 | -- | -- | -- | -- |
| 22.47 | 0.222 | 13 | -0.251 | 0.603 | -- | -- | -- | 0.0749 | 2.95 | -- | -- | -- | -- |
| 23.63 | 0.226 | 13 | -0.0954 | -- | -0.907 | -- | -- | 0.18 | -- | 24.27 | 24 | -- | -- |
| 18.81 | 0.202 | 13 | -- | 0.377 | -0.559 | -- | -- | 0.141 | 2.34 | 24.8 | 121 | -- | -- |
| 43.38 | 0.308 | 13 | -0.226 | -- | -- | -- | -- | 0.0905 | -- | -- | -- | -- | -- |
| 24.14 | 0.23 | 13 | -- | 0.598 | -- | -- | -- | 0.103 | 2.94 | -- | -- | -- | -- |
| 23.81 | 0.227 | 13 | -- | -- | -0.906 | -- | -- | 0.2 | -- | 24.16 | 13 | -- | -- |
| 44.72 | 0.312 | 13 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 16 | 17.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 18 | 17.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 23 | 17.71 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 30 | 17.75 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 39 | 17.81 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 13 |
| 46 | 17.84 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 49 | 17.85 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 55 | 17.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 58 | 17.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 61 | 17.87 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 15 |
| 62 | 17.87 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 71 | 17.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 86 | 17.90 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 96 | 17.90 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 97 | 17.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 100 | 17.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 101 | 17.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 111 | 17.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 127 | 17.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 153 | 17.94 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 187 | 17.95 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 188 | 17.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 205 | 17.96 | temperature | 20 | 14400 | < th | dose independent | sin | 13 | NA |
| 217 | 17.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 227 | 17.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 247 | 17.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 276 | 17.98 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 311 | 18.00 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 344 | 18.01 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 347 | 18.01 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 12 |
| 425 | 18.03 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 427 | 18.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 429 | 18.03 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 6 |
| 464 | 18.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 489 | 18.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 491 | 18.04 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 493 | 18.04 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 502 | 18.04 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 506 | 18.04 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 543 | 18.05 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 558 | 18.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 600 | 18.06 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 601 | 18.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 623 | 18.07 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 624 | 18.07 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 642 | 18.07 | radiation | 40 | 1440 | < th | dose dependent | sin | 19 | NA |
| 647 | 18.07 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 670 | 18.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 674 | 18.08 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 8 |
| 691 | 18.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 749 | 18.09 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 752 | 18.09 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 759 | 18.09 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 793 | 18.09 | temperature | 25 | 14400 | < th | dose dependent | rect. | 10 | 19 |
| 809 | 18.10 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 811 | 18.10 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 839 | 18.10 | radiation | 1 | 1440 | > th | dose dependent | sin | 18 | NA |
| 847 | 18.10 | radiation | 10 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 858 | 18.10 | temperature | 25 | 14400 | < th | dose dependent | rect. | 10 | 16 |
| 895 | 18.11 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 896 | 18.11 | radiation | 10 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 899 | 18.11 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 903 | 18.11 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 910 | 18.11 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 958 | 18.12 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 971 | 18.12 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 974 | 18.12 | temperature | 25 | 14400 | < th | dose dependent | sin | 16 | NA |
| 981 | 18.12 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 997 | 18.12 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 13 |