BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0218100 Os06g0218100|AK058667
(69 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22475.1 | chr2:9541523-9544778 FORWARD LENGTH=300 93 3e-20
AT4G40100.1 | chr4:18583244-18584524 FORWARD LENGTH=226 91 1e-19
AT1G28200.1 | chr1:9850395-9852300 REVERSE LENGTH=260 82 5e-17
AT5G13200.1 | chr5:4207081-4208079 FORWARD LENGTH=273 62 5e-11
AT5G23370.1 | chr5:7863542-7864201 REVERSE LENGTH=220 60 3e-10
AT5G08350.1 | chr5:2686417-2687175 REVERSE LENGTH=223 57 2e-09
AT5G23360.1 | chr5:7861817-7862449 FORWARD LENGTH=211 57 2e-09
AT5G23350.1 | chr5:7858545-7859387 REVERSE LENGTH=281 56 4e-09
AT4G01600.1 | chr4:693210-694319 FORWARD LENGTH=234 49 4e-07
>AT2G22475.1 | chr2:9541523-9544778 FORWARD LENGTH=300
Length = 299
Score = 92.8 bits (229), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSA 64
+VVIPLHQL+A NPS S VNPAEKYIQV+SV+ HEFWFMGFL YD AV SLQ+++ +
Sbjct: 237 KVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSLQAG 294
>AT4G40100.1 | chr4:18583244-18584524 FORWARD LENGTH=226
Length = 225
Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 48/57 (84%)
Query: 8 VVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSA 64
VVIPLHQL++ NPS+S VNPAEKYIQV+SV+ HEFWFMGFL Y+ AV SLQ+ + +
Sbjct: 163 VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTLQAG 219
>AT1G28200.1 | chr1:9850395-9852300 REVERSE LENGTH=260
Length = 259
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 48/57 (84%)
Query: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNS 63
+VV+P +QL+A NPS S+VN ++KYIQV+S++ HEFWFMGF+ Y+ AV SLQEA+ S
Sbjct: 200 KVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQS 256
>AT5G13200.1 | chr5:4207081-4208079 FORWARD LENGTH=273
Length = 272
Score = 62.4 bits (150), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKA 53
+VV+PL + NP V K P EKYIQ+ +V+GH+FWFMGF+ Y+KA
Sbjct: 206 RVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKA 252
>AT5G23370.1 | chr5:7863542-7864201 REVERSE LENGTH=220
Length = 219
Score = 59.7 bits (143), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 40/56 (71%)
Query: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMN 62
+V IPL ++ N S + P++KY++VV+V+G +FWFMGFL Y KA L++A++
Sbjct: 159 KVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALS 214
>AT5G08350.1 | chr5:2686417-2687175 REVERSE LENGTH=223
Length = 222
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSARE 66
+V IPL ++ N S + P++KY++VV+V+G +FWFMGFL Y KA L++A++ + E
Sbjct: 158 KVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALSLSFE 217
>AT5G23360.1 | chr5:7861817-7862449 FORWARD LENGTH=211
Length = 210
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 40/56 (71%)
Query: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMN 62
+V IPL ++ N S + P+++Y++VV+V+ ++FWFMGF+ Y KA L++A+N
Sbjct: 151 KVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALN 206
>AT5G23350.1 | chr5:7858545-7859387 REVERSE LENGTH=281
Length = 280
Score = 55.8 bits (133), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNS 63
+V IPL ++ N S + P++KY+++V+++ +FWFMGF+ Y KA L++A+N+
Sbjct: 221 KVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALNN 277
>AT4G01600.1 | chr4:693210-694319 FORWARD LENGTH=234
Length = 233
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 39/59 (66%)
Query: 7 QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSAR 65
+VV+ ++ + + S + + P+E+Y+ +V+ +G EFWFMGF+ Y A L +A+ ++R
Sbjct: 170 KVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKALLNSR 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,383,298
Number of extensions: 39116
Number of successful extensions: 120
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 9
Length of query: 69
Length of database: 11,106,569
Length adjustment: 41
Effective length of query: 28
Effective length of database: 9,982,513
Effective search space: 279510364
Effective search space used: 279510364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)