BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0218100 Os06g0218100|AK058667
         (69 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0218100  Hypothetical protein                                145   5e-36
Os03g0187600  GRAM domain containing protein                       86   7e-18
Os09g0466300  GRAM domain containing protein                       82   6e-17
Os07g0621300  GRAM domain containing protein                       82   1e-16
Os03g0736700  GRAM domain containing protein                       73   4e-14
Os02g0636700  GRAM domain containing protein                       66   5e-12
Os12g0478100  GRAM domain containing protein                       65   8e-12

>Os06g0218100 Hypothetical protein
          Length = 69

 Score =  145 bits (367), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MFFLDKQVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEA 60
          MFFLDKQVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEA
Sbjct: 1  MFFLDKQVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEA 60

Query: 61 MNSAREMQP 69
          MNSAREMQP
Sbjct: 61 MNSAREMQP 69



>Os03g0187600 GRAM domain containing protein
          Length = 264

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 7   QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSARE 66
           +VVIP  QLR+ NPS S+ N +EKYIQVVSV+ HEFWFMGF+ YD AV +LQEA+  A+ 
Sbjct: 202 KVVIPHTQLRSVNPSTSRTNASEKYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQEAQN 261

Query: 67  MQ 68
           ++
Sbjct: 262 LR 263



>Os09g0466300 GRAM domain containing protein
          Length = 192

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%)

Query: 7   QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSARE 66
           +V IPLH+LR+A+PS SK  PAEK+IQ+VSV+ HEFW MGF+ YD AV  LQEA++    
Sbjct: 130 KVAIPLHRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALSGFHH 189

Query: 67  MQ 68
           +Q
Sbjct: 190 LQ 191



>Os07g0621300 GRAM domain containing protein
          Length = 149

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 7   QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSAR 65
           +VV+P+ QLR+  P+ S+ NPAE+YIQVVSV+ H+FWFMGF+ YD AV SLQEA+   +
Sbjct: 81  KVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMGFVNYDGAVKSLQEAVRGGK 139



>Os03g0736700 GRAM domain containing protein
          Length = 247

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 7   QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAM 61
           +VV+PL+Q+++ NPS S  N  E+YIQ+++ + HEFWFMGF+ YDKA+ +L EA+
Sbjct: 189 KVVLPLNQVKSVNPSASMTNRGERYIQIMTTDNHEFWFMGFVSYDKALKNLYEAL 243



>Os02g0636700 GRAM domain containing protein
          Length = 232

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 7   QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNSAR 65
           +V IPL +++AA PS +K  P +KYI+VV+ +G EFWFMGF+ Y +++  L++A+  AR
Sbjct: 173 KVTIPLRKVKAAKPSENKHKPEQKYIEVVTNDGFEFWFMGFVSYHRSLHHLEQAVAQAR 231



>Os12g0478100 GRAM domain containing protein
          Length = 146

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 43/57 (75%)

Query: 7   QVVIPLHQLRAANPSVSKVNPAEKYIQVVSVEGHEFWFMGFLMYDKAVCSLQEAMNS 63
           +V+IP+ ++ AA P   K +P EKY+ VV+V+ H+FWFMGF+ YDKAV  L +A++S
Sbjct: 71  KVMIPVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHLVQAVSS 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,080,956
Number of extensions: 57774
Number of successful extensions: 160
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 7
Length of query: 69
Length of database: 17,035,801
Length adjustment: 41
Effective length of query: 28
Effective length of database: 14,895,027
Effective search space: 417060756
Effective search space used: 417060756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)