Os02g0636600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAM domain containing protein.
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Os02g0636600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.01 | 0.719 | 9.97 | -1.25 | 2.42 | 2.08 | -1.29 | -5.8 | 1.16 | 10.6 | 25.95 | 1208 | -- | -- |
| 248.56 | 0.734 | 9.82 | 0.0788 | 2.36 | 1.53 | -0.928 | -- | 1.31 | 10.6 | 24.8 | 2621 | -- | -- |
| 240.06 | 0.722 | 9.95 | -1.23 | 2.42 | 2.09 | -- | -5.89 | 1.27 | 10.5 | 26.69 | 1201 | -- | -- |
| 252.45 | 0.74 | 9.81 | 0.0542 | 2.37 | 1.46 | -- | -- | 1.42 | 10.5 | 24.87 | 2617 | -- | -- |
| 557.48 | 1.1 | 10 | -1.1 | -- | 1.74 | -- | -4.89 | 1.24 | -- | 26.5 | 1517 | -- | -- |
| 325.39 | 0.846 | 9.78 | 0.595 | 2.17 | -- | -1.27 | -- | 1.57 | 10.4 | -- | -- | -- | -- |
| 331.78 | 0.853 | 9.78 | 0.542 | 2.18 | -- | -- | -- | 1.56 | 10.3 | -- | -- | -- | -- |
| 537.82 | 1.08 | 9.9 | 0.177 | -- | 1.84 | -- | -- | 1.29 | -- | 22.47 | 5860 | -- | -- |
| 252.49 | 0.74 | 9.82 | -- | 2.37 | 1.47 | -- | -- | 1.4 | 10.5 | 24.76 | 2615 | -- | -- |
| 621.88 | 1.17 | 9.84 | 0.509 | -- | -- | -- | -- | 1.56 | -- | -- | -- | -- | -- |
| 339.53 | 0.862 | 9.8 | -- | 2.18 | -- | -- | -- | 1.5 | 10.2 | -- | -- | -- | -- |
| 538.62 | 1.08 | 9.91 | -- | -- | 1.87 | -- | -- | 1.26 | -- | 22.47 | 5860 | -- | -- |
| 628.73 | 1.17 | 9.85 | -- | -- | -- | -- | -- | 1.5 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 2 | 221.17 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 4 | 222.25 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 5 | 222.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 9 | 223.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 18 | 225.84 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 19 | 225.98 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 38 | 228.54 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 44 | 229.41 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 55 | 230.57 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 79 | 232.90 | radiation | 1.0 | 90 | < th | dose independent | sin | 14 | NA |
| 81 | 232.99 | radiation | 1.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 102 | 234.94 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 162 | 238.48 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 165 | 238.56 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 173 | 238.85 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 174 | 238.86 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 15 |
| 182 | 239.30 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 204 | 239.88 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 211 | 239.98 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 222 | 240.15 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 238 | 240.32 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 241 | 240.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 244 | 240.45 | radiation | 1.0 | 90 | > th | dose independent | sin | 14 | NA |
| 253 | 240.63 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 260 | 240.78 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 262 | 240.81 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 311 | 241.61 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 323 | 241.78 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 330 | 241.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 344 | 242.12 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 355 | 242.27 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 376 | 242.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 387 | 242.64 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 13 |
| 394 | 242.71 | radiation | 1.0 | 270 | < th | dose independent | sin | 18 | NA |
| 424 | 243.21 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 21 |
| 427 | 243.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 452 | 243.68 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 453 | 243.68 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 471 | 243.92 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 477 | 243.95 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 486 | 244.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 488 | 244.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 520 | 244.20 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 13 |
| 522 | 244.22 | radiation | 1.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 550 | 244.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 553 | 244.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 593 | 244.80 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 613 | 244.91 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 619 | 244.99 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 14 |
| 622 | 245.02 | temperature | 25.0 | 720 | < th | dose independent | sin | 13 | NA |
| 650 | 245.33 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 736 | 245.97 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 768 | 246.16 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 17 |
| 770 | 246.18 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 782 | 246.22 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 794 | 246.27 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 820 | 246.46 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 842 | 246.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 866 | 246.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 8 |
| 868 | 246.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 879 | 247.05 | radiation | 1.0 | 270 | > th | dose independent | sin | 19 | NA |
| 929 | 247.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 20 |
| 931 | 247.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 963 | 247.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 981 | 247.78 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |