BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0636600 Os02g0636600|Os02g0636600
(229 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0636600 GRAM domain containing protein 449 e-126
Os04g0526800 GRAM domain containing protein 360 e-100
Os02g0636700 GRAM domain containing protein 228 3e-60
Os04g0527000 GRAM domain containing protein 222 1e-58
Os10g0489000 GRAM domain containing protein 197 6e-51
Os09g0466300 GRAM domain containing protein 122 2e-28
Os03g0187600 GRAM domain containing protein 119 1e-27
Os12g0478100 GRAM domain containing protein 105 3e-23
Os03g0736700 GRAM domain containing protein 104 5e-23
Os07g0621300 GRAM domain containing protein 103 1e-22
>Os02g0636600 GRAM domain containing protein
Length = 229
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/229 (95%), Positives = 218/229 (95%)
Query: 1 MTKSSCAHVVGVPVTSKAYAIEEATTARDGGKKVDGDRLAVSLTHPSPYTSFGYKHSSKL 60
MTKSSCAHVVGVPVTSKAYAIEEATTARDGGKKVDGDRLAVSLTHPSPYTSFGYKHSSKL
Sbjct: 1 MTKSSCAHVVGVPVTSKAYAIEEATTARDGGKKVDGDRLAVSLTHPSPYTSFGYKHSSKL 60
Query: 61 QVIHWVNKLGRRAQGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAEKGE 120
QVIHWVNKLGRRAQGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAEKGE
Sbjct: 61 QVIHWVNKLGRRAQGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAEKGE 120
Query: 121 RLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDXXXXXXXXXXXPLRRI 180
RLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGD PLRRI
Sbjct: 121 RLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDVVARVPYKVVVPLRRI 180
Query: 181 KRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISEL 229
KRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISEL
Sbjct: 181 KRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISEL 229
>Os04g0526800 GRAM domain containing protein
Length = 233
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/233 (76%), Positives = 195/233 (83%), Gaps = 5/233 (2%)
Query: 1 MTKSSC--AHVVGVPVTSKAYAIEEATTARDGG--KKVDGDRLAVSLTHPSPYTSFGYKH 56
M KSS HV+GVPVT+KA+ IEE + G +K DGD LAVSL+HPSPYTSFGYKH
Sbjct: 1 MRKSSINGVHVIGVPVTAKAFGIEEEVSLARGQSFRKADGDHLAVSLSHPSPYTSFGYKH 60
Query: 57 SSKLQVIHWVNKLGRRAQGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSA 116
SSK QVIHWV+KL RRAQGFR+HVTLGPKLSETV+GKLSLGA+ILQAGG+ERVFR+AFSA
Sbjct: 61 SSKGQVIHWVSKLSRRAQGFREHVTLGPKLSETVKGKLSLGAKILQAGGIERVFRKAFSA 120
Query: 117 EKGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDXXXXXXXXXXXP 176
EKGERLVKALQCYLYTTGGPIAGMLFVS +K+AFRSDR + VTS GD P
Sbjct: 121 EKGERLVKALQCYLYTTGGPIAGMLFVSTKKVAFRSDRPVTVTSAKGD-VARVPYKVVVP 179
Query: 177 LRRIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISEL 229
LRRI +VRPSENADKPE+KYIHV TVDGFEFWFMGFVSYQR CKYMQQ ISEL
Sbjct: 180 LRRIAQVRPSENADKPEEKYIHVVTVDGFEFWFMGFVSYQRSCKYMQQAISEL 232
>Os02g0636700 GRAM domain containing protein
Length = 232
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 152/234 (64%), Gaps = 18/234 (7%)
Query: 4 SSCAHVVGVPVTSKAYAIEEATTARDGGKKVDGDRLAVSLTHPSPYTSFGYKHSSK---- 59
+S HV+G+PV++ AY IEE A + D V SF + + +
Sbjct: 5 TSQDHVIGIPVSNTAYGIEEPDFAAEETTTPDHAGFVVG--------SFQFNNDANSPTT 56
Query: 60 -LQVIHWVNKLGRR----AQGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAF 114
+K GR+ AQG ++HVTLGPKLSETV+GKL+LGARILQAGGVE+VFRQ F
Sbjct: 57 TTTTTDRASKYGRKGDKIAQGIKEHVTLGPKLSETVKGKLTLGARILQAGGVEKVFRQWF 116
Query: 115 SAEKGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDXXXXXXXXXX 174
S +K E+L++A QCYL TT GPIAGMLFVS ++AFRSDR LAV++P GD
Sbjct: 117 SVDKNEKLLRASQCYLSTTAGPIAGMLFVSTERVAFRSDRPLAVSAPGGD-KVRVPYKVT 175
Query: 175 XPLRRIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISE 228
PLR++K +PSEN KPEQKYI V T DGFEFWFMGFVSY R +++Q +++
Sbjct: 176 IPLRKVKAAKPSENKHKPEQKYIEVVTNDGFEFWFMGFVSYHRSLHHLEQAVAQ 229
>Os04g0527000 GRAM domain containing protein
Length = 215
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 155/230 (67%), Gaps = 19/230 (8%)
Query: 1 MTKSSC-AHVVGVPVTSKAYAIEEATTARDGGKKVDGDRLAVSLTHPSPYTSFGYKHSSK 59
M K++C HV+G+PV+++A+ IEE +G + H +S + SS+
Sbjct: 1 MEKAACNEHVIGIPVSNRAFGIEEPDFPSEGA----------AAYHAEAKSSATARTSSR 50
Query: 60 LQVIHWVNKLGRR-AQGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAEK 118
+ G R AQG ++HVTLGPKL ET++GKL+LGARILQAGGVE+VFR+ F+ K
Sbjct: 51 F------GRTGDRLAQGIKEHVTLGPKLYETMKGKLTLGARILQAGGVEKVFRRWFAVGK 104
Query: 119 GERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDXXXXXXXXXXXPLR 178
GE+L++A QCYL TT GPIAGMLF+S +IAFRSDRSLA+T+P+GD PLR
Sbjct: 105 GEKLLRASQCYLSTTAGPIAGMLFISTERIAFRSDRSLALTTPSGD-TVRVPYKVAIPLR 163
Query: 179 RIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISE 228
R+K +PSEN +PEQKY+ V T DGFEFWFMGFVS+Q K ++ +++
Sbjct: 164 RVKTAKPSENKHRPEQKYVQVVTDDGFEFWFMGFVSFQVTLKNLELAVAQ 213
>Os10g0489000 GRAM domain containing protein
Length = 220
Score = 197 bits (501), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 143/230 (62%), Gaps = 28/230 (12%)
Query: 1 MTKSSCAHVVGVPVTSKAYAIE--EATTARDGGKKVDGDRLAVSLTHPSPYTSFGYKHSS 58
M S HV+G+P+ S AYA E E T+R SL H K
Sbjct: 1 MEGFSQEHVIGIPLASFAYAEEKIERKTSRS------------SLVH---------KKGK 39
Query: 59 KLQVIHWVNKLGRRA----QGFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAF 114
K +I+ ++KL ++ QGF++H+TLGPK+S+T++GKLSLGA++LQAG +++VFRQ F
Sbjct: 40 KNSIIYRMSKLSQKTDSYVQGFKEHITLGPKISDTLKGKLSLGAKVLQAGSIDKVFRQYF 99
Query: 115 SAEKGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDXXXXXXXXXX 174
+K E+L+KA QCYL TT GPIAGMLF+S KIAF SDR L +TSP G
Sbjct: 100 QVDKDEKLLKAFQCYLSTTAGPIAGMLFISTEKIAFHSDRPLDLTSPKG-GITRVPYKVL 158
Query: 175 XPLRRIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQ 224
P +RIK EN P++KYI V TVDGF+FWFMGF+S+ + +Y+Q+
Sbjct: 159 IPAKRIKSAAVRENLYNPDEKYIDVVTVDGFDFWFMGFISHTKSFEYLQR 208
>Os09g0466300 GRAM domain containing protein
Length = 192
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 65 WVNKLGRRAQGFRD-------HVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAE 117
W ++G + D H+ P + E G+++ G ++L GG +R+FRQAFSA
Sbjct: 17 WARRVGETTRKAEDLSRNTWQHLRTAPSIGEAAVGRIAQGTKVLAEGGHDRIFRQAFSAP 76
Query: 118 KGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPAGDXXXXXXXXXXXPL 177
E+L K+ CYL T+ GP+ G+L++S ++AF SD L+ + G PL
Sbjct: 77 PDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCSDSPLSYEA-GGGSKEWSYYKVAIPL 135
Query: 178 RRIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVIS 227
R++ PS + +P +K+I + +VD EFW MGFV+Y K++Q+ +S
Sbjct: 136 HRLRSASPSASKQRPAEKFIQLVSVDRHEFWLMGFVNYDSAVKHLQEALS 185
>Os03g0187600 GRAM domain containing protein
Length = 264
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 75 GFRDHVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAEKGERLVKALQCYLYTTG 134
F H+ GP +++ G++S +++ GG +++F Q F E+L K CYL T+
Sbjct: 107 NFWQHLKTGPSITDAAMGRVSQITKVIAEGGYDKIFHQTFDVLPDEKLKKPYACYLSTSA 166
Query: 135 GPIAGMLFVSNRKIAFRSDRSLAVTSPAGDXXXXXXXXXXXPLRRIKRVRPSENADKPEQ 194
GP+ G+L++SN+K+AF SD LA GD P +++ V PS + +
Sbjct: 167 GPVMGVLYLSNKKLAFCSDNPLAYK--VGDKDEWSYYKVVIPHTQLRSVNPSTSRTNASE 224
Query: 195 KYIHVATVDGFEFWFMGFVSYQRCCKYMQQVISE 228
KYI V +VD EFWFMGFV Y K +Q+ + E
Sbjct: 225 KYIQVVSVDNHEFWFMGFVYYDSAVKNLQEALQE 258
>Os12g0478100 GRAM domain containing protein
Length = 146
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 104 GGVERVFRQAFS-AEKGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFRSDRSLAVTSPA 162
GG +++++Q F+ A ERL K CYL T GP+AG L++++R +AF SDR L+ +P+
Sbjct: 3 GGFDKLYKQTFAGAGADERLRKTFACYLSTATGPVAGTLYLTDRSVAFCSDRPLSFAAPS 62
Query: 163 GDXXXXXXXXXXXPLRRIKRVRPSENADKPEQKYIHVATVDGFEFWFMGFVSYQRCCKYM 222
G P+ ++ P + P +KY+HV TVD +FWFMGFVSY + ++
Sbjct: 63 GQTAWSYYKVMI-PVAKVAAAEPVTMKESPPEKYVHVVTVDSHDFWFMGFVSYDKAVHHL 121
Query: 223 QQVIS 227
Q +S
Sbjct: 122 VQAVS 126
>Os03g0736700 GRAM domain containing protein
Length = 247
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 79 HVTLGPKLSETVRGKLSLGARILQAGGVERVFRQAFSAEKGERLVKALQCYLYTTGGPIA 138
H+ P +++ +L+ G ++ GG +RVF QAF GE+L KA CYL T+ GP+
Sbjct: 89 HLRTAPNMADAAVARLAQGTKVYAEGGHDRVFTQAFGVVPGEQLRKAYACYLSTSSGPVI 148
Query: 139 GMLFVSNRKIAFRSDRSLAVTSPAGDXXXXXXXXXXX-------PLRRIKRVRPSENADK 191
G L++S ++AF SD ++ +PA PL ++K V PS +
Sbjct: 149 GTLYISTARLAFCSDSPISYHAPAVAVAGAAPAHPPEAIYKVVLPLNQVKSVNPSASMTN 208
Query: 192 PEQKYIHVATVDGFEFWFMGFVSYQRCCKYMQQVI 226
++YI + T D EFWFMGFVSY + K + + +
Sbjct: 209 RGERYIQIMTTDNHEFWFMGFVSYDKALKNLYEAL 243
>Os07g0621300 GRAM domain containing protein
Length = 149
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 92 GKLSLGARILQAGGVERVFRQAFSAEKGERLVKALQCYLYTTGGPIAGMLFVSNRKIAFR 151
G+++ ++++ GG ++VF Q F E+L KA CYL T+ GPI G+L++S KIAF
Sbjct: 2 GRIAQISKVIAEGGYDKVFHQTFECLPDEKLKKAYACYLSTSHGPIMGVLYISTAKIAFC 61
Query: 152 SDRSLAVTSPAGDXXXXXXXXXXXPLRRIKRVRPSENADKPEQKYIHVATVDGFEFWFMG 211
SD +A + + P+ +++ V P+ + P ++YI V +VD +FWFMG
Sbjct: 62 SDSPVAYVT-EDNKNQSSIYKVVVPVAQLRSVTPTASQQNPAERYIQVVSVDNHDFWFMG 120
Query: 212 FVSYQRCCKYMQQVI 226
FV+Y K +Q+ +
Sbjct: 121 FVNYDGAVKSLQEAV 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,207,652
Number of extensions: 273609
Number of successful extensions: 487
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 10
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)