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Os10g0489000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.83 (0.0325) R2 : 0.529
β1 : -2.04 (0.123) R2dD : 0.318 R2D : 0.0446
β2 : 1.39 (0.0879) R2dC : 0.342 R2C : -0.0446
β3 : -3.27 (0.203) R2dE : 0.38 R2E : -0.191
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.695 (0.0701) R2dN8 : 0.136 R2N8 : -0.0158
σ : 0.604
deviance : 168.21
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C
peak time of C : 23.8
E
wheather : radiation
threshold : 0.997
memory length : 855
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.7
open length of G : 15.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.15 0.604 9.84 -2.03 1.45 -2.91 0.671 1.34 -0.689 23.6 1.324 830 4.83 15.3
165.31 0.599 9.85 -2.02 1.44 -3.03 1.06 -- -0.7 23.7 1.198 845 4.78 15.4
165.75 0.6 9.86 -2.09 1.42 -2.86 -- 1.97 -0.709 23.6 1.227 841 4.73 15.5
168.21 0.604 9.83 -2.04 1.39 -3.27 -- -- -0.695 23.8 0.997 855 4.7 15.5
224.52 0.698 9.83 -2.02 -- -2.35 -- 2.02 -0.73 -- 1.536 1100 4.45 15.8
238.8 0.724 9.78 -1.41 0.906 -- 1.49 -- -0.457 21.3 -- -- -- --
246.72 0.736 9.78 -1.46 0.903 -- -- -- -0.458 21.2 -- -- -- --
189.88 0.642 9.83 -2.07 -- -3.11 -- -- -0.73 -- 0.8292 996 2.73 17.3
263.37 0.756 9.76 -- 1.13 -2.2 -- -- -0.401 23.6 1.68 846 4.52 15.8
293.97 0.801 9.75 -1.46 -- -- -- -- -0.463 -- -- -- -- --
302.92 0.814 9.74 -- 0.904 -- -- -- -0.295 21.1 -- -- -- --
275.42 0.773 9.68 -- -- -1.97 -- -- -0.246 -- 1.824 858 2.22 17.8
349.99 0.873 9.72 -- -- -- -- -- -0.301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.97 radiation 1.0 720 < th dose dependent rect. 4 18
2 181.28 radiation 1.0 720 < th dose dependent rect. 4 16
4 181.63 radiation 1.0 720 < th dose dependent rect. 3 20
6 181.84 humidity 80.0 90 > th dose dependent rect. 5 16
7 181.97 humidity 80.0 90 > th dose dependent rect. 5 18
14 182.99 humidity 80.0 90 > th dose dependent rect. 5 10
15 183.02 radiation 1.0 720 < th dose dependent rect. 1 23
16 183.09 humidity 80.0 90 > th dose dependent rect. 5 12
22 184.02 radiation 1.0 1440 < th dose dependent rect. 15 14
24 184.15 radiation 1.0 1440 < th dose independent rect. 15 10
28 184.21 radiation 1.0 1440 < th dose independent rect. 15 6
32 184.34 radiation 1.0 1440 < th dose independent rect. 15 14
38 184.51 radiation 1.0 1440 > th dose independent rect. 15 14
39 184.51 humidity 80.0 1440 > th dose dependent rect. 11 1
40 184.55 radiation 1.0 720 < th dose independent rect. 4 16
43 184.61 radiation 1.0 1440 > th dose independent rect. 15 4
53 184.77 radiation 1.0 1440 < th dose dependent rect. 15 10
54 184.79 radiation 1.0 1440 < th dose dependent rect. 15 8
58 184.82 radiation 1.0 1440 < th dose dependent rect. 15 6
65 185.01 humidity 50.0 43200 < th dose independent rect. 14 1
69 185.06 radiation 1.0 720 < th dose dependent rect. 15 20
86 185.26 radiation 1.0 720 < th dose dependent rect. 3 23
119 185.59 humidity 60.0 43200 > th dose independent rect. 9 1
124 185.68 humidity 50.0 43200 > th dose independent rect. 14 1
127 185.84 radiation 1.0 1440 < th dose dependent sin 13 NA
129 185.89 humidity 60.0 43200 < th dose independent rect. 9 1
132 186.08 radiation 1.0 1440 > th dose independent rect. 16 1
134 186.15 radiation 1.0 1440 < th dose independent rect. 16 1
158 186.84 radiation 1.0 1440 < th dose dependent rect. 16 1
161 186.86 radiation 20.0 14400 < th dose independent rect. 24 6
167 186.91 humidity 80.0 1440 > th dose independent rect. 11 1
180 187.08 humidity 80.0 1440 < th dose independent rect. 11 1
188 187.21 radiation 1.0 720 < th dose dependent sin 1 NA
189 187.22 radiation 1.0 270 < th dose independent sin 0 NA
191 187.24 radiation 1.0 720 < th dose dependent rect. 19 23
196 187.29 radiation 1.0 1440 < th dose independent sin 14 NA
210 187.45 radiation 1.0 1440 > th dose independent sin 14 NA
233 187.77 radiation 1.0 720 > th dose independent rect. 16 18
244 187.89 humidity 60.0 43200 < th dose independent rect. 8 3
249 187.93 radiation 1.0 720 > th dose independent rect. 15 20
271 188.24 humidity 90.0 720 > th dose dependent rect. 7 15
273 188.25 radiation 1.0 720 < th dose dependent no NA NA
284 188.37 humidity 60.0 43200 < th dose independent rect. 6 5
327 188.89 humidity 50.0 43200 > th dose independent rect. 6 10
334 188.91 wind 5.0 43200 > th dose dependent rect. 18 2
342 188.98 humidity 50.0 43200 < th dose independent rect. 6 10
346 189.00 radiation 1.0 720 < th dose independent rect. 1 23
367 189.08 radiation 1.0 720 < th dose dependent rect. 9 23
414 189.19 radiation 1.0 1440 < th dose dependent rect. 22 23
510 189.49 radiation 1.0 1440 < th dose dependent rect. 6 23
515 189.53 humidity 80.0 90 > th dose dependent sin 23 NA
539 189.61 humidity 50.0 43200 > th dose independent sin 0 NA
542 189.61 radiation 1.0 1440 < th dose independent rect. 15 21
548 189.63 radiation 1.0 270 > th dose independent sin 0 NA
572 189.70 humidity 50.0 43200 < th dose independent sin 23 NA
604 189.84 humidity 80.0 30 > th dose independent rect. 5 15
626 189.98 precipitation 0.1 43200 > th dose independent rect. 23 1
628 189.98 precipitation 0.1 43200 > th dose dependent rect. 23 1
664 190.11 precipitation 0.1 43200 < th dose independent rect. 23 1
666 190.11 radiation 1.0 270 > th dose independent rect. 7 11
670 190.11 precipitation 0.1 43200 < th dose dependent rect. 23 1
704 190.19 radiation 20.0 14400 < th dose independent rect. 21 9
755 190.36 radiation 1.0 720 > th dose independent rect. 13 23
803 190.49 wind 7.0 14400 < th dose independent rect. 14 7
822 190.59 humidity 80.0 43200 < th dose independent rect. 3 6
910 190.94 wind 7.0 14400 > th dose independent rect. 14 7
915 190.95 radiation 1.0 720 < th dose dependent rect. 3 12
923 190.98 temperature 15.0 90 > th dose dependent rect. 7 22
925 190.99 humidity 80.0 30 > th dose independent rect. 5 11
958 191.07 humidity 80.0 30 > th dose independent rect. 5 9