BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0133800 Os12g0133800|AK059577
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0133800 Similar to Auxin efflux carrier protein 434 e-122
Os11g0137000 Similar to PIN1-like auxin transport protein 429 e-120
Os06g0232300 Similar to Auxin transport protein REH1 318 2e-87
Os02g0743400 Auxin transport protein REH1 317 5e-87
Os01g0643300 Similar to Auxin efflux carrier protein 298 2e-81
Os06g0660200 Similar to Auxin efflux carrier protein 294 5e-80
Os01g0715600 Similar to Auxin efflux carrier component 2 (A... 184 7e-47
Os08g0529000 Similar to Auxin efflux carrier component 1 (P... 181 4e-46
Os01g0802700 Auxin Efflux Carrier family protein 177 6e-45
Os01g0919800 Similar to Efflux carrier of polar auxin trans... 176 2e-44
Os09g0505400 Auxin Efflux Carrier family protein 149 2e-36
>Os12g0133800 Similar to Auxin efflux carrier protein
Length = 250
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/250 (88%), Positives = 222/250 (88%)
Query: 1 MFVWSSSASPVSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEYSFGNKNEKDGPTLS 60
MFVWSSSASPVSER YDEYSFGNKNEKDGPTLS
Sbjct: 1 MFVWSSSASPVSERAAAAAAAGAVHVFGGGGADHGDAKGAQAYDEYSFGNKNEKDGPTLS 60
Query: 61 KLGSNSTAQLRPKDDGEGRAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVS 120
KLGSNSTAQLRPKDDGEGRAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVS
Sbjct: 61 KLGSNSTAQLRPKDDGEGRAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVS 120
Query: 121 YRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGP 180
YRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGP
Sbjct: 121 YRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGP 180
Query: 181 AVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPI 240
AVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPI
Sbjct: 181 AVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPI 240
Query: 241 TLVYYILLGL 250
TLVYYILLGL
Sbjct: 241 TLVYYILLGL 250
>Os11g0137000 Similar to PIN1-like auxin transport protein
Length = 554
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/250 (88%), Positives = 221/250 (88%), Gaps = 1/250 (0%)
Query: 1 MFVWSSSASPVSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEYSFGNKNEKDGPTLS 60
MFVWSSSASPVSER YDEYSFGNKNEKDGPTLS
Sbjct: 306 MFVWSSSASPVSERAAAAAAGAVHVFGGGGADHGDAKGAQA-YDEYSFGNKNEKDGPTLS 364
Query: 61 KLGSNSTAQLRPKDDGEGRAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVS 120
KLGSNSTAQLRPKDDGEG AAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVS
Sbjct: 365 KLGSNSTAQLRPKDDGEGMAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVS 424
Query: 121 YRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGP 180
YRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGP
Sbjct: 425 YRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGP 484
Query: 181 AVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPI 240
AVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPI
Sbjct: 485 AVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPI 544
Query: 241 TLVYYILLGL 250
TLVYYILLGL
Sbjct: 545 TLVYYILLGL 554
>Os06g0232300 Similar to Auxin transport protein REH1
Length = 592
Score = 318 bits (816), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 190/261 (72%), Gaps = 17/261 (6%)
Query: 1 MFVWSSSASPVSE--RXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEYSFGNKN--EKDG 56
MFVWSSSASPVS+ D++SFGN+ E+D
Sbjct: 338 MFVWSSSASPVSDVFGNGAEYNDAAAVKEVRMAVASPRKADGVERDDFSFGNRGVAERDA 397
Query: 57 PTLSKL-------GSNSTAQLRPKDDGEGRAAAMPPASVMTRLILIMVWRKLIRNPNTYS 109
+ G + L P AMPP SVMTRLILIMVWRKLIRNPNTYS
Sbjct: 398 EAGDEKSVAAAVSGEHGKPGLTPA------PTAMPPTSVMTRLILIMVWRKLIRNPNTYS 451
Query: 110 SLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLAS 169
SL+G+IWSLV +RW EMPAII +SISILSDAGLGMAMFSLGLFMALQPRIIACGN +A+
Sbjct: 452 SLIGLIWSLVCFRWNFEMPAIILKSISILSDAGLGMAMFSLGLFMALQPRIIACGNKVAT 511
Query: 170 YAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTA 229
+AMAVRFL GPAVMAAASIAVGLRG LLH+AIVQAALPQGIVPFVFAKEY+VHP+ILSTA
Sbjct: 512 FAMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 571
Query: 230 VIFGMLIALPITLVYYILLGL 250
VIFGMLIALPITLVYYILLGL
Sbjct: 572 VIFGMLIALPITLVYYILLGL 592
>Os02g0743400 Auxin transport protein REH1
Length = 595
Score = 317 bits (812), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 169/253 (66%), Positives = 185/253 (73%), Gaps = 3/253 (1%)
Query: 1 MFVWSSSASPVSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXY---DEYSFGNKNEKDGP 57
MFVWSSSASPVS+ Y D++SFGN+ D
Sbjct: 343 MFVWSSSASPVSDVFGGGAPDYNDAAAVKSPRKMDGAKDREDYVERDDFSFGNRGVMDRD 402
Query: 58 TLSKLGSNSTAQLRPKDDGEGRAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWS 117
+ + A AMPP SVMTRLILIMVWRKLIRNPNTYSSL+G+IWS
Sbjct: 403 AEAGDEKAAAAAGADPSKAMAAPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWS 462
Query: 118 LVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFL 177
LV +RW EMPAI+ +SISILSDAGLGMAMFSLGLFMALQP IIACGN +A+YAMAVRFL
Sbjct: 463 LVCFRWNFEMPAIVLKSISILSDAGLGMAMFSLGLFMALQPHIIACGNKVATYAMAVRFL 522
Query: 178 VGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIA 237
GPAVMAAAS AVGLRG LLH+AIVQAALPQGIVPFVFAKEY+VHP+ILSTAVIFGMLIA
Sbjct: 523 AGPAVMAAASFAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPSILSTAVIFGMLIA 582
Query: 238 LPITLVYYILLGL 250
LPITLVYYILLGL
Sbjct: 583 LPITLVYYILLGL 595
>Os01g0643300 Similar to Auxin efflux carrier protein
Length = 589
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/268 (63%), Positives = 186/268 (69%), Gaps = 18/268 (6%)
Query: 1 MFVWSSSASPVSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEYSFGNKNEKDGPTLS 60
MFVWSSSASPVSE + G+ E +
Sbjct: 322 MFVWSSSASPVSEVSGLPVFSGGGGGGALDVGAKEIHMVIPADLPQNNGSGKEHEEYGAV 381
Query: 61 KLGS-------NSTAQLRPKD---DGEGRAAA--------MPPASVMTRLILIMVWRKLI 102
LG +STA+L PK DG MPPASVMTRLILIMVWRKLI
Sbjct: 382 ALGGGGGGENFSSTAELHPKVVDVDGPNAGGGAAGAGQYQMPPASVMTRLILIMVWRKLI 441
Query: 103 RNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIA 162
RNPNTYSSLLG+ WSLV++RW + MPAI+ +SISILSDAGLGMAMFSLGLFMALQP IIA
Sbjct: 442 RNPNTYSSLLGLAWSLVAFRWHVSMPAIVEKSISILSDAGLGMAMFSLGLFMALQPSIIA 501
Query: 163 CGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVH 222
CG S A +MAVRFL GPAVMAAASIA+GLRG LLH+AIVQAALPQGIVPFVFAKEYNVH
Sbjct: 502 CGKSAAVVSMAVRFLAGPAVMAAASIAIGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVH 561
Query: 223 PNILSTAVIFGMLIALPITLVYYILLGL 250
P ILSTAVIFGMLIALPITL+YYILLGL
Sbjct: 562 PAILSTAVIFGMLIALPITLLYYILLGL 589
>Os06g0660200 Similar to Auxin efflux carrier protein
Length = 630
Score = 294 bits (752), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 164/275 (59%), Positives = 191/275 (69%), Gaps = 25/275 (9%)
Query: 1 MFVWSSSASPVSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEYSFGN-----KNE-- 53
MFVWSSSASPVSE + G+ KN
Sbjct: 356 MFVWSSSASPVSEANLRNAVNHAASTDFASAPPPAAVPVGGATPKGVSGSVTPAAKNGGG 415
Query: 54 ----KDG---PTL---SKLGSNSTAQLRPKDDGEGR--------AAAMPPASVMTRLILI 95
+DG P +K + + + P+ G G A MPP SVMTRLILI
Sbjct: 416 ELEIEDGLKSPAAGLAAKFPVSGSPYVAPRKKGGGADVPGLAEAAHPMPPTSVMTRLILI 475
Query: 96 MVWRKLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMA 155
MVWRKLIRNPNTYSSL+G++WSLVS+RW I+MP+II SISILSDAGLGMAMFSLGLFMA
Sbjct: 476 MVWRKLIRNPNTYSSLIGLVWSLVSFRWNIQMPSIIKGSISILSDAGLGMAMFSLGLFMA 535
Query: 156 LQPRIIACGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVF 215
LQP+II+CG ++A++AMAVRFL GPAV+AA SIA+GLRGVLLH+AIVQAALPQGIVPFVF
Sbjct: 536 LQPKIISCGKTVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHVAIVQAALPQGIVPFVF 595
Query: 216 AKEYNVHPNILSTAVIFGMLIALPITLVYYILLGL 250
AKEYN HP ILSTAVIFGMLIALPIT++YY+LLG+
Sbjct: 596 AKEYNCHPQILSTAVIFGMLIALPITILYYVLLGI 630
>Os01g0715600 Similar to Auxin efflux carrier component 2 (AtPIN2) (Auxin efflux
carrier AGR) (Polar-auxin-transport efflux component
AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitive root 1)
(AtEIR1) (WAVY6)
Length = 311
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/140 (63%), Positives = 110/140 (78%)
Query: 106 NTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGN 165
T S G+IW+LV +RW I +P I++ SI +LSD GLGMAMFSLGLF ALQ +IIACG
Sbjct: 163 TTSSETTGLIWALVGFRWHIRLPLIVSNSIRMLSDGGLGMAMFSLGLFTALQTKIIACGA 222
Query: 166 SLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNI 225
A+A+RF +GPA+M +S A+G+RGVLL IAIVQAALPQGIVPFVFAKEYNV +I
Sbjct: 223 KRMLLALAIRFFLGPALMGMSSYAIGMRGVLLKIAIVQAALPQGIVPFVFAKEYNVQADI 282
Query: 226 LSTAVIFGMLIALPITLVYY 245
LSTA+I GM++A+P+ L YY
Sbjct: 283 LSTAIIVGMMVAVPVALAYY 302
>Os08g0529000 Similar to Auxin efflux carrier component 1 (PIN-FORMED protein)
(AtPIN1)
Length = 370
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 112/151 (74%)
Query: 100 KLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPR 159
KL RNPN Y+S+LGV+W+ ++YRW + +P I+ S+ ++S G GM+MFS+GLFM Q R
Sbjct: 219 KLARNPNVYASVLGVVWACIAYRWHLSLPGIVTGSLQVMSRTGTGMSMFSMGLFMGQQER 278
Query: 160 IIACGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEY 219
+IACG L + MA+RF+ GP + A+GLRG +LH+AI+QAALPQ I FVFAKEY
Sbjct: 279 VIACGAGLTALGMALRFVAGPLATLVGAAALGLRGDVLHLAIIQAALPQSIASFVFAKEY 338
Query: 220 NVHPNILSTAVIFGMLIALPITLVYYILLGL 250
+H ++LSTAVIFG LI+LPI + YY +LG
Sbjct: 339 GLHADVLSTAVIFGTLISLPILIAYYAVLGF 369
>Os01g0802700 Auxin Efflux Carrier family protein
Length = 426
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 85 PASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLG 144
PA M +I + V +KL++ PNTY+S LG+IWSL++++ G MP I+ S+ + +G
Sbjct: 262 PAPSMKHVIWMAV-KKLLQIPNTYASFLGLIWSLIAFKCGFSMPKIVEDSLFTIRTTAVG 320
Query: 145 MAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQA 204
++MFS G F+A Q R + CG +AS++M ++FL+GP VM AS+ +G+ G LLHIA+VQA
Sbjct: 321 LSMFSSGTFIARQSRFVPCGYKIASFSMVIKFLIGPVVMLFASLVIGMHGTLLHIAVVQA 380
Query: 205 ALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPITLVYYILLGL 250
ALP + FV+A+EY VH +I+ST VI G+ I+LP+T+VYYILLGL
Sbjct: 381 ALPLAVTSFVYAEEYKVHADIMSTGVILGIFISLPVTIVYYILLGL 426
>Os01g0919800 Similar to Efflux carrier of polar auxin transport
Length = 363
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 115/152 (75%)
Query: 99 RKLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQP 158
KL RNPNTY+S +G+ W+ ++ R I +P+ S+ I+S +G GMAMFS+GLFMA Q
Sbjct: 210 HKLARNPNTYASFVGITWACLANRLHIALPSAFEGSVLIMSKSGTGMAMFSMGLFMAQQE 269
Query: 159 RIIACGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKE 218
+IIACG S A+ + ++F +GPA MA SIAVGLRG +L +AI+QAALPQ I F+FAKE
Sbjct: 270 KIIACGTSFAALGLVLKFALGPAAMAIGSIAVGLRGDVLRVAIIQAALPQSITSFIFAKE 329
Query: 219 YNVHPNILSTAVIFGMLIALPITLVYYILLGL 250
Y +H ++LSTAVIFGML++LP+ + +YI+L L
Sbjct: 330 YGLHADVLSTAVIFGMLVSLPLLVGFYIVLEL 361
>Os09g0505400 Auxin Efflux Carrier family protein
Length = 398
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 114/197 (57%), Gaps = 43/197 (21%)
Query: 97 VWRKLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMAL 156
VW K+ RNPN Y+ +LGV W+ V+ RW +E P+II S+ I+S G+G++MFS+GLFMAL
Sbjct: 200 VWLKVARNPNVYAGVLGVAWACVTNRWHVETPSIIEGSVLIMSKTGVGLSMFSMGLFMAL 259
Query: 157 QPRIIACGNSLASYAMAVRFLVGPAVMAAASIAVGLRGVLLHIAIV-------------- 202
Q +II CG L MA+RF+ GPA A + A+GLRG LL +AI+
Sbjct: 260 QDKIIVCGAGLTVLGMALRFVAGPAATAVGAFALGLRGDLLRLAIIQAYTHLHEIHSPSS 319
Query: 203 -----------------------------QAALPQGIVPFVFAKEYNVHPNILSTAVIFG 233
QAALPQ I FVFAKEY +H ILSTAVIFG
Sbjct: 320 FFLLSPEICLNSNGCMHDTSPHDETARDEQAALPQSITTFVFAKEYGLHAEILSTAVIFG 379
Query: 234 MLIALPITLVYYILLGL 250
L +LP+ +VYYI+LG
Sbjct: 380 TLASLPVLIVYYIVLGF 396
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,219,818
Number of extensions: 259692
Number of successful extensions: 1027
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1025
Number of HSP's successfully gapped: 12
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)