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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0505400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin Efflux Carrier family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0226) R2 : 0.00387
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0633 (0.0476) R2dN8 : 0.00499 R2N8 : 0.00387
σ : 0.426
deviance : 83.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.51 0.419 2.96 -0.141 0.141 0.474 0.0444 -1.51 0.0845 12 0.5999 874 -- --
80.34 0.417 2.95 -0.13 0.142 0.384 -0.0495 -- 0.0839 12.1 0.6 963 -- --
79.5 0.415 2.96 -0.144 0.14 0.47 -- -1.49 0.0869 12 0.6 997 -- --
80.33 0.417 2.95 -0.129 0.136 0.385 -- -- 0.0826 12 0.5718 870 -- --
80.69 0.418 2.96 -0.147 -- 0.564 -- -1.39 0.0944 -- 0.6528 870 -- --
81.27 0.423 2.95 -0.0847 0.167 -- -0.0266 -- 0.0555 11.7 -- -- -- --
81.27 0.422 2.95 -0.0858 0.167 -- -- -- 0.0553 11.7 -- -- -- --
81.45 0.42 2.95 -0.143 -- 0.483 -- -- 0.089 -- 0.6 870 -- --
80.75 0.419 2.95 -- 0.141 0.324 -- -- 0.0895 12 0.5796 870 -- --
83.02 0.426 2.96 -0.0906 -- -- -- -- 0.0533 -- -- -- -- --
81.46 0.422 2.95 -- 0.168 -- -- -- 0.0649 11.8 -- -- -- --
81.97 0.422 2.95 -- -- 0.423 -- -- 0.099 -- 0.5998 870 -- --
83.24 0.426 2.95 -- -- -- -- -- 0.0633 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.62 radiation 1.0 10 > th dose dependent rect. 18 1
12 72.84 humidity 60.0 10 < th dose dependent rect. 18 16
14 73.24 humidity 60.0 10 < th dose dependent rect. 18 1
29 74.35 temperature 20.0 90 < th dose independent rect. 8 1
31 74.53 humidity 80.0 270 < th dose dependent rect. 6 1
32 74.64 humidity 80.0 270 < th dose independent rect. 6 1
33 74.65 temperature 25.0 90 < th dose dependent rect. 8 2
49 75.54 humidity 80.0 720 > th dose independent rect. 2 6
50 75.64 temperature 20.0 270 < th dose independent rect. 6 3
64 75.93 humidity 80.0 720 < th dose independent rect. 1 7
90 76.40 humidity 80.0 1440 > th dose independent rect. 5 1
101 76.56 radiation 1.0 10 > th dose independent rect. 18 1
119 76.57 humidity 80.0 720 > th dose independent rect. 23 9
149 76.93 humidity 60.0 10 < th dose independent rect. 18 16
170 77.07 temperature 30.0 10 > th dose dependent rect. 18 16
178 77.13 temperature 30.0 10 > th dose dependent rect. 18 1
193 77.14 humidity 60.0 10 < th dose independent rect. 18 1
221 77.20 wind 3.0 270 > th dose dependent rect. 5 2
297 77.67 humidity 80.0 720 < th dose independent rect. 2 1
362 77.95 radiation 20.0 10 < th dose independent rect. 10 1
411 78.14 atmosphere 1010.0 10 < th dose independent rect. 12 21
413 78.16 temperature 20.0 1440 > th dose independent rect. 8 1
421 78.19 radiation 20.0 10 < th dose independent rect. 9 3
441 78.25 wind 3.0 270 > th dose independent rect. 5 2
445 78.26 humidity 80.0 720 < th dose independent sin 7 NA
461 78.31 wind 1.0 720 < th dose dependent rect. 24 2
462 78.32 humidity 50.0 4320 < th dose independent rect. 12 2
475 78.34 temperature 20.0 270 < th dose dependent rect. 6 6
500 78.39 humidity 70.0 720 > th dose dependent rect. 2 6
503 78.39 temperature 20.0 270 < th dose dependent rect. 6 14
508 78.41 humidity 80.0 720 > th dose independent sin 7 NA
510 78.41 humidity 70.0 720 > th dose dependent rect. 3 4
561 78.55 temperature 20.0 720 > th dose independent rect. 7 8
615 78.64 wind 1.0 1440 < th dose dependent rect. 21 1
628 78.66 radiation 40.0 10 < th dose dependent rect. 9 3
637 78.69 humidity 50.0 10 > th dose independent rect. 9 3
656 78.72 humidity 50.0 10 > th dose independent rect. 18 18
671 78.75 atmosphere 1010.0 30 < th dose independent rect. 23 10
673 78.75 temperature 15.0 10 > th dose independent rect. 12 21
685 78.77 humidity 60.0 30 > th dose independent rect. 12 21
694 78.79 atmosphere 1000.0 10 > th dose independent rect. 9 3
701 78.80 humidity 80.0 720 > th dose independent rect. 23 15
709 78.81 temperature 25.0 10 < th dose independent rect. 9 1
731 78.84 temperature 30.0 30 < th dose independent rect. 12 21
732 78.84 wind 1.0 1440 < th dose dependent rect. 19 7
774 78.90 wind 3.0 10 > th dose independent rect. 10 1
788 78.92 humidity 70.0 10 > th dose independent rect. 9 1
802 78.94 radiation 1.0 10 > th dose independent rect. 9 3
807 78.95 humidity 80.0 30 < th dose independent rect. 9 3
817 78.96 humidity 90.0 10 < th dose dependent rect. 18 18
818 78.97 atmosphere 995.0 10 > th dose independent rect. 12 6
822 78.97 humidity 80.0 720 < th dose independent rect. 22 19
826 78.98 temperature 10.0 10 > th dose independent rect. 9 3
829 78.98 atmosphere 1015.0 10 < th dose independent rect. 9 3
830 78.98 precipitation 0.1 10 < th dose independent rect. 9 3
831 78.98 temperature 10.0 10 > th dose independent rect. 12 6
833 78.98 atmosphere 1015.0 10 < th dose independent rect. 12 6
834 78.98 precipitation 0.1 10 < th dose independent rect. 12 6
837 78.98 temperature 10.0 10 > th dose independent rect. 18 18
845 78.98 precipitation 0.1 10 < th dose dependent rect. 9 3
846 78.98 precipitation 0.1 10 < th dose dependent rect. 12 6
850 78.99 temperature 10.0 1440 > th dose independent rect. 10 3
854 78.99 atmosphere 995.0 1440 > th dose independent rect. 10 3
861 78.99 atmosphere 995.0 10 > th dose independent rect. 18 18
863 78.99 temperature 10.0 1440 > th dose independent rect. 13 21
866 78.99 atmosphere 995.0 10 > th dose independent rect. 12 21
873 79.00 wind 9.0 30 < th dose independent rect. 9 3
875 79.00 precipitation 0.1 10 < th dose independent rect. 18 18
878 79.00 precipitation 0.1 10 < th dose dependent rect. 18 18
882 79.01 radiation 1.0 10 > th dose independent rect. 18 18
898 79.02 wind 3.0 10 > th dose dependent rect. 18 1
903 79.03 wind 7.0 1440 < th dose independent rect. 23 1
908 79.03 radiation 30.0 10 < th dose independent rect. 18 19
909 79.03 wind 9.0 10 < th dose independent rect. 12 21
911 79.03 radiation 20.0 4320 < th dose dependent rect. 23 1
927 79.04 wind 9.0 10 < th dose independent rect. 12 6
930 79.04 precipitation 0.1 30 < th dose independent rect. 12 21
931 79.04 humidity 80.0 270 < th dose dependent rect. 8 1
937 79.04 precipitation 0.1 30 < th dose dependent rect. 12 21
942 79.05 wind 1.0 10 > th dose independent rect. 12 6
960 79.07 temperature 10.0 1440 > th dose independent rect. 23 1
963 79.07 temperature 30.0 1440 < th dose independent rect. 23 1
967 79.07 humidity 50.0 1440 > th dose independent rect. 23 1
977 79.07 atmosphere 995.0 1440 > th dose independent rect. 23 1
978 79.07 radiation 1.0 1440 < th dose independent rect. 23 1