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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0643300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin efflux carrier protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.19 (0.0466) R2 : 0.687
β1 : -1.24 (0.168) R2dD : 0.039 R2D : 0.0102
β2 : 10.1 (0.431) R2dC : 5.08 R2C : -2.07
β3 : -6.94 (0.406) R2dE : 2.71 R2E : -4.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.098 (0.0989) R2dN8 : 0.000927 R2N8 : -0.00721
σ : 0.857
deviance : 338.21
__
_____
C
peak time of C : 4.5
E
wheather : humidity
threshold : 70.13
memory length : 693
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 7.32

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
320.3 0.841 6.18 -1.25 9.87 -6.83 6.63 -7.57 -0.111 4.63 70.21 696 18.1 7.7
358.07 0.881 6.15 -1.29 11.9 -8.86 -0.702 -- -0.217 4.99 68 710 18.1 8.63
327.13 0.842 6.19 -1.25 10.1 -6.9 -- -1.89 -0.0984 4.5 70.08 696 18.2 7.3
338.21 0.857 6.19 -1.24 10.1 -6.94 -- -- -0.098 4.5 70.13 693 18.3 7.32
974.39 1.46 6.36 -0.998 -- -0.93 -- -0.737 -0.234 -- 69.98 5829 18.2 7.48
438.31 0.981 6.32 -1.08 3.44 -- -0.00297 -- -0.362 6.14 -- -- -- --
438.31 0.98 6.32 -1.08 3.44 -- -- -- -0.362 6.14 -- -- -- --
940.29 1.43 6.37 -1.04 -- -1.08 -- -- -0.277 -- 69.05 4421 17.4 7.84
367.59 0.893 6.15 -- 9.93 -6.84 -- -- 0.0696 4.5 73 683 18.3 7.22
1053.33 1.52 6.38 -0.981 -- -- -- -- -0.285 -- -- -- -- --
468.91 1.01 6.29 -- 3.43 -- -- -- -0.242 6.16 -- -- -- --
882.31 1.38 6.08 -- -- -5.75 -- -- 0.71 -- 56.18 5828 16.8 7.88
1078.7 1.53 6.35 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 326.91 humidity 70 720 > th dose independent rect. 18 8
4 331.40 temperature 25 720 > th dose dependent rect. 18 4
13 336.26 humidity 70 720 < th dose independent rect. 18 14
18 337.64 humidity 70 720 < th dose independent rect. 18 2
50 343.26 humidity 70 720 > th dose independent sin 13 NA
57 344.77 humidity 70 720 > th dose independent rect. 16 16
93 346.46 temperature 30 4320 < th dose independent rect. 18 14
96 346.87 humidity 70 720 < th dose dependent rect. 19 1
109 347.26 humidity 70 720 < th dose dependent rect. 18 14
111 347.66 temperature 30 4320 < th dose independent rect. 18 12
112 347.92 temperature 30 4320 < th dose independent rect. 18 9
129 348.35 temperature 30 720 < th dose independent rect. 16 9
136 349.39 humidity 70 720 > th dose independent rect. 18 15
143 350.07 temperature 30 720 > th dose independent rect. 18 1
162 350.34 humidity 70 4320 < th dose dependent rect. 19 12
168 350.49 humidity 70 4320 < th dose dependent rect. 19 2
178 350.52 humidity 70 4320 < th dose independent rect. 19 12
196 350.77 humidity 70 4320 < th dose independent rect. 19 2
208 350.85 temperature 30 1440 < th dose independent rect. 17 3
217 351.07 humidity 70 1440 > th dose independent rect. 19 12
234 351.60 humidity 70 1440 > th dose independent rect. 19 1
262 352.26 temperature 30 4320 > th dose dependent rect. 18 1
281 352.38 temperature 30 720 < th dose independent rect. 15 18
357 354.78 temperature 30 1440 < th dose independent sin 12 NA
382 355.54 humidity 70 720 < th dose independent sin 11 NA
399 355.96 temperature 30 1440 > th dose independent sin 12 NA
430 356.36 radiation 1 720 > th dose independent rect. 18 11
511 357.90 temperature 30 720 < th dose dependent rect. 18 6
540 358.30 temperature 20 90 > th dose independent rect. 3 19
569 358.96 radiation 1 720 > th dose independent rect. 18 1
601 359.49 temperature 30 720 < th dose dependent rect. 15 10
609 359.75 humidity 60 1440 > th dose independent rect. 12 7
624 360.14 humidity 60 1440 > th dose independent rect. 12 17
628 360.17 humidity 60 1440 > th dose independent rect. 12 19
632 360.22 humidity 60 1440 > th dose independent rect. 12 13
681 360.95 humidity 70 720 > th dose independent rect. 16 4
737 361.54 humidity 60 1440 < th dose independent rect. 12 7
743 361.60 wind 5 43200 < th dose independent rect. 15 21
747 361.68 wind 5 43200 < th dose independent rect. 16 19
748 361.71 wind 5 43200 > th dose independent rect. 15 21
777 361.98 humidity 80 43200 < th dose independent rect. 22 1
807 362.20 wind 5 43200 > th dose independent rect. 16 18
826 362.26 temperature 10 720 > th dose dependent rect. 17 5
830 362.31 humidity 70 1440 < th dose dependent sin 12 NA
840 362.53 humidity 60 1440 < th dose independent sin 16 NA
846 362.59 temperature 30 1440 > th dose dependent sin 11 NA
873 362.76 wind 5 43200 > th dose dependent rect. 15 22
934 363.01 wind 5 43200 > th dose independent rect. 17 23
935 363.02 wind 5 43200 < th dose independent sin 12 NA
967 363.24 wind 5 43200 < th dose independent rect. 17 15
968 363.26 wind 5 43200 > th dose independent sin 12 NA