Os06g0232300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin transport protein REH1.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0232300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Auxin transport protein REH1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 438.16 | 0.983 | 5.48 | 4.51 | 3.79 | -3.06 | 2.19 | -2.51 | 1.14 | 6.69 | 21.31 | 319 | 22.6 | 2.55 |
| 419.3 | 0.954 | 5.46 | 4.7 | 3.65 | -3.17 | 2.13 | -- | 1.25 | 6.71 | 23.26 | 367 | 22.5 | 0.801 |
| 430.53 | 0.966 | 5.5 | 4.82 | 3.66 | -2.91 | -- | 0.648 | 1.12 | 6.57 | 22.76 | 372 | 22.5 | 0.911 |
| 430.08 | 0.966 | 5.45 | 4.74 | 3.63 | -2.93 | -- | -- | 1.23 | 6.68 | 22.96 | 369 | 22.5 | 0.75 |
| 565.8 | 1.11 | 5.48 | 5.65 | -- | -4.47 | -- | 4.33 | 1.46 | -- | 11.46 | 552 | 8.14 | 14.4 |
| 562.97 | 1.11 | 5.52 | 4.47 | 3.3 | -- | 1.72 | -- | 0.969 | 7.76 | -- | -- | -- | -- |
| 571.39 | 1.12 | 5.52 | 4.51 | 3.3 | -- | -- | -- | 0.967 | 7.74 | -- | -- | -- | -- |
| 515.25 | 1.06 | 5.56 | 4.97 | -- | -4.19 | -- | -- | 1.18 | -- | 0.7067 | 515 | 8.21 | 15 |
| 1021.57 | 1.49 | 5.55 | -- | 3.61 | -2.07 | -- | -- | 0.687 | 6.68 | 20.91 | 364 | 22.7 | 0.467 |
| 1160.39 | 1.59 | 5.6 | 4.56 | -- | -- | -- | -- | 1.01 | -- | -- | -- | -- | -- |
| 1108.34 | 1.56 | 5.63 | -- | 3.34 | -- | -- | -- | 0.464 | 7.65 | -- | -- | -- | -- |
| 1119.29 | 1.56 | 5.66 | -- | -- | -3.46 | -- | -- | 0.671 | -- | -14.84 | 418 | 9.77 | 13.3 |
| 1707.76 | 1.93 | 5.71 | -- | -- | -- | -- | -- | 0.509 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 449.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 2 | 449.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 3 | 451.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 6 | 452.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 12 | 455.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 18 | 457.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 41 | 462.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 44 | 462.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 88 | 467.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 113 | 469.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 133 | 471.40 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 141 | 471.90 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 161 | 472.87 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 22 |
| 181 | 473.69 | temperature | 15 | 270 | > th | dose dependent | sin | 10 | NA |
| 195 | 474.16 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 205 | 474.53 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 20 |
| 248 | 476.21 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 11 |
| 253 | 476.38 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 257 | 476.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 275 | 477.22 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 13 |
| 286 | 477.65 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 6 |
| 333 | 478.82 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 14 |
| 336 | 478.89 | temperature | 20 | 30 | > th | dose independent | rect. | 24 | 5 |
| 348 | 479.20 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 398 | 480.01 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 7 |
| 482 | 481.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 489 | 481.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 505 | 481.79 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 575 | 482.78 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 585 | 482.88 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 13 |
| 586 | 482.88 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 617 | 483.38 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 704 | 484.67 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 706 | 484.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 730 | 485.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 739 | 485.13 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 13 |
| 778 | 485.69 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 780 | 485.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 781 | 485.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 821 | 486.18 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 902 | 487.09 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |