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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0133800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin efflux carrier protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0226) R2 : 0.000679
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0265 (0.0475) R2dN8 : 0.000877 R2N8 : 0.000679
σ : 0.425
deviance : 82.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.7 0.411 3.09 0.0374 0.0977 0.627 -0.45 -2 0.0354 3.2 1015 10 -- --
79.79 0.419 3.09 0.00815 0.0947 0.581 -0.565 -- 0.0302 2.7 1014 46 -- --
78.34 0.415 3.09 0.0485 0.0977 0.634 -- -2.16 0.0383 3.7 1015 23 -- --
80.42 0.418 3.09 0.00749 0.0903 0.689 -- -- 0.0293 3.38 1014 524 -- --
78.86 0.416 3.09 0.0526 -- 0.662 -- -2.17 0.0413 -- 1015 33 -- --
81.11 0.422 3.09 0.00692 0.109 -- -0.559 -- 0.0233 2.59 -- -- -- --
82.2 0.425 3.09 0.0211 0.11 -- -- -- 0.0264 3.13 -- -- -- --
78.87 0.414 3.09 0.0742 -- 1.41 -- -- 0.0443 -- 1016 593 -- --
78.53 0.413 3.09 -- 0.099 1.36 -- -- 0.0299 4.13 1016 300 -- --
82.9 0.425 3.09 0.0258 -- -- -- -- 0.0293 -- -- -- -- --
82.22 0.424 3.09 -- 0.111 -- -- -- 0.0241 3.13 -- -- -- --
79.01 0.414 3.09 -- -- 1.39 -- -- 0.0367 -- 1016 590 -- --
82.91 0.425 3.09 -- -- -- -- -- 0.0265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.87 wind 1 90 < th dose dependent rect. 24 1
2 73.55 wind 1 90 < th dose independent rect. 24 1
3 74.38 atmosphere 1015 10 < th dose independent rect. 3 23
5 75.15 atmosphere 1015 10 < th dose independent rect. 21 23
12 75.94 atmosphere 1005 30 < th dose dependent rect. 24 2
18 76.03 atmosphere 1015 270 < th dose independent rect. 13 10
23 76.16 wind 9 1440 > th dose dependent rect. 13 1
26 76.19 wind 1 90 < th dose independent rect. 13 13
39 76.30 wind 1 90 < th dose independent rect. 15 11
42 76.33 wind 9 1440 < th dose independent rect. 13 1
45 76.35 humidity 90 10 > th dose dependent rect. 1 2
50 76.44 wind 1 90 < th dose dependent rect. 24 3
59 76.53 humidity 90 30 > th dose independent rect. 1 2
60 76.54 atmosphere 1015 90 < th dose independent rect. 21 14
63 76.57 atmosphere 1015 270 < th dose independent rect. 12 23
65 76.60 atmosphere 1015 270 < th dose independent rect. 24 23
71 76.68 atmosphere 1015 10 < th dose independent rect. 14 11
72 76.68 wind 9 720 > th dose dependent rect. 12 11
86 76.71 wind 9 720 > th dose dependent rect. 12 7
89 76.72 atmosphere 1015 720 < th dose independent rect. 11 14
97 76.83 wind 9 1440 > th dose independent rect. 13 1
104 76.88 atmosphere 1015 720 < th dose independent rect. 16 8
109 76.93 atmosphere 1015 90 < th dose independent rect. 21 12
111 76.94 atmosphere 1015 720 < th dose independent rect. 21 2
113 77.01 atmosphere 1015 720 < th dose independent rect. 7 16
120 77.03 wind 9 720 > th dose independent rect. 12 7
154 77.24 wind 1 90 < th dose dependent rect. 13 14
168 77.26 wind 9 720 < th dose independent sin 16 NA
173 77.27 wind 7 720 > th dose independent rect. 12 4
197 77.35 temperature 20 30 > th dose independent rect. 1 2
205 77.37 wind 7 720 < th dose independent rect. 3 16
227 77.40 atmosphere 1015 270 < th dose independent rect. 19 13
229 77.40 atmosphere 1010 720 > th dose dependent rect. 16 1
240 77.43 atmosphere 1015 720 < th dose independent rect. 21 4
246 77.45 temperature 20 720 < th dose independent rect. 17 1
249 77.46 atmosphere 1015 10 < th dose independent rect. 16 9
251 77.46 wind 1 90 < th dose dependent rect. 15 12
253 77.47 wind 9 720 > th dose dependent sin 16 NA
259 77.49 wind 9 720 > th dose independent sin 16 NA
274 77.51 atmosphere 1015 720 < th dose independent sin 20 NA
277 77.52 atmosphere 1015 720 > th dose independent sin 20 NA
278 77.52 atmosphere 1015 720 > th dose independent sin 23 NA
280 77.52 atmosphere 1015 720 > th dose independent rect. 3 21
281 77.52 atmosphere 1015 720 > th dose dependent sin 23 NA
284 77.52 atmosphere 1015 720 > th dose dependent rect. 3 19
286 77.53 atmosphere 1015 270 < th dose independent rect. 13 20
296 77.54 atmosphere 1010 720 > th dose dependent rect. 14 1
302 77.56 atmosphere 1015 720 < th dose independent sin 23 NA
316 77.58 atmosphere 1015 720 > th dose independent rect. 20 5
347 77.62 wind 9 720 > th dose dependent rect. 16 7
377 77.66 wind 9 720 > th dose independent rect. 15 3
378 77.66 wind 9 720 > th dose independent rect. 15 8
398 77.68 atmosphere 1015 10 < th dose independent sin 11 NA
410 77.68 atmosphere 1015 10 < th dose independent sin 23 NA
421 77.68 wind 9 720 > th dose independent rect. 15 5
428 77.68 atmosphere 1010 720 > th dose dependent rect. 11 7
450 77.69 wind 7 720 < th dose independent rect. 7 8
454 77.70 atmosphere 1015 10 > th dose independent sin 7 NA
550 77.70 atmosphere 1015 10 > th dose independent no NA NA
568 77.70 atmosphere 1015 10 < th dose independent no NA NA
573 77.70 atmosphere 1015 270 > th dose independent rect. 20 1
580 77.70 atmosphere 1015 10 > th dose independent rect. 23 1