BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0115500 Os12g0115500|J023050M03
(93 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0115500 Plant lipid transfer protein/Par allergen fami... 186 3e-48
AK061740 146 3e-36
Os11g0116200 Similar to Nonspecific lipid-transfer protein ... 141 9e-35
Os12g0115300 Plant lipid transfer protein/Par allergen fami... 137 2e-33
Os11g0116000 Similar to Nonspecific lipid-transfer protein ... 137 2e-33
AK070192 137 2e-33
AK059819 82 7e-17
Os12g0115000 Similar to Lipid transfer protein LPT II 82 8e-17
Os11g0427800 Similar to Lipid transfer protein LPT III 80 3e-16
Os12g0114500 Similar to Nonspecific lipid-transfer protein ... 79 6e-16
AK102455 79 6e-16
Os11g0114900 Similar to Nonspecific lipid-transfer protein ... 77 3e-15
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 77 3e-15
AK059808 77 3e-15
Os12g0114800 Similar to Lipid transfer protein 76 5e-15
Os11g0115100 Similar to Lipid transfer protein 76 5e-15
Os11g0115400 Lipid transfer protein LPT IV 75 9e-15
AK058805 68 2e-12
Os02g0445300 65 1e-11
Os05g0477900 Similar to Nonspecific lipid-transfer protein ... 65 2e-11
>Os12g0115500 Plant lipid transfer protein/Par allergen family protein
Length = 93
Score = 186 bits (472), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 LLDHQIIDHPTIKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSI 60
LLDHQIIDHPTIKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSI
Sbjct: 1 LLDHQIIDHPTIKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSI 60
Query: 61 KSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS 93
KSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS
Sbjct: 61 KSLNLGTVAGVPGKCGVNVGFPISLSTDCNKVS 93
>AK061740
Length = 118
Score = 146 bits (369), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/82 (91%), Positives = 76/82 (92%)
Query: 12 IKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 71
I I + GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV
Sbjct: 37 IAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 96
Query: 72 PGKCGVNVGFPISLSTDCNKVS 93
PGKCGVNVGFPISLSTDCNKVS
Sbjct: 97 PGKCGVNVGFPISLSTDCNKVS 118
>Os11g0116200 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 132
Score = 141 bits (356), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 73/79 (92%)
Query: 12 IKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 71
I I + GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV
Sbjct: 37 IAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 96
Query: 72 PGKCGVNVGFPISLSTDCN 90
PGKCGVNVGFPISLSTDCN
Sbjct: 97 PGKCGVNVGFPISLSTDCN 115
>Os12g0115300 Plant lipid transfer protein/Par allergen family protein
Length = 118
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 73/82 (89%)
Query: 12 IKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 71
I I + GR GLTQGCCNGVKGLNNAARTTADRQAACRCLK+LAG+IKSLNLG AG+
Sbjct: 37 IAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGI 96
Query: 72 PGKCGVNVGFPISLSTDCNKVS 93
PGKCGVNVGFPISLSTDC+KVS
Sbjct: 97 PGKCGVNVGFPISLSTDCSKVS 118
>Os11g0116000 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 118
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 73/82 (89%)
Query: 12 IKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 71
I I + GR GLTQGCCNGVKGLNNAARTTADRQAACRCLK+LAG+IKSLNLG AG+
Sbjct: 37 IAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGI 96
Query: 72 PGKCGVNVGFPISLSTDCNKVS 93
PGKCGVNVGFPISLSTDC+KVS
Sbjct: 97 PGKCGVNVGFPISLSTDCSKVS 118
>AK070192
Length = 118
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 73/82 (89%)
Query: 12 IKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 71
I I + GR GLTQGCCNGVKGLNNAARTTADRQAACRCLK+LAG+IKSLNLG AG+
Sbjct: 37 IAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGI 96
Query: 72 PGKCGVNVGFPISLSTDCNKVS 93
PGKCGVNVGFPISLSTDC+KVS
Sbjct: 97 PGKCGVNVGFPISLSTDCSKVS 118
>AK059819
Length = 117
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 52/72 (72%)
Query: 21 GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVG 80
G SG + CC+GV+ LN+AA TTADR+ AC CLK++AGSI LN G A +P KCGV++
Sbjct: 45 GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIP 104
Query: 81 FPISLSTDCNKV 92
+ IS S DC+ V
Sbjct: 105 YTISPSIDCSSV 116
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 52/72 (72%)
Query: 21 GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVG 80
G SG + CC+GV+ LN+AA TTADR+ AC CLK++AGSI LN G A +P KCGV++
Sbjct: 38 GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIP 97
Query: 81 FPISLSTDCNKV 92
+ IS S DC+ V
Sbjct: 98 YTISPSIDCSSV 109
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%)
Query: 21 GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVG 80
G +G + CCNGV+ L +AARTTADR+ AC CLK+ A IK LN G A +P KCGV+V
Sbjct: 45 GGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVP 104
Query: 81 FPISLSTDCNKV 92
+ IS S DC++V
Sbjct: 105 YTISASIDCSRV 116
>Os12g0114500 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 16 ILNMAGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGK 74
I+ GR S T GCC+GV+ LN+AA TTADRQ C CLK ++ L VAG+P K
Sbjct: 41 IMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSK 100
Query: 75 CGVNVGFPISLSTDCNKV 92
CGVN+ + IS STDC++V
Sbjct: 101 CGVNIPYAISPSTDCSRV 118
>AK102455
Length = 119
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 16 ILNMAGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGK 74
I+ GR S T GCC+GV+ LN+AA TTADRQ C CLK ++ L VAG+P K
Sbjct: 41 IMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSK 100
Query: 75 CGVNVGFPISLSTDCNKV 92
CGVN+ + IS STDC++V
Sbjct: 101 CGVNIPYAISPSTDCSRV 118
>Os11g0114900 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 16 ILNMAGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGK 74
I+ GR S T GCC+GV+ LN+AA TTADRQ C CLK ++ L VAG+P K
Sbjct: 41 IMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSK 100
Query: 75 CGVNVGFPISLSTDCNKV 92
C VN+ + IS STDC++V
Sbjct: 101 CDVNIPYAISPSTDCSRV 118
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 21 GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVG 80
G +G + CC+GV+ L AA TTADR+ AC CLK+ A IK LN G A +P KCGV+V
Sbjct: 44 GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVP 103
Query: 81 FPISLSTDCNKVS 93
+ IS S DC++VS
Sbjct: 104 YTISASIDCSRVS 116
>AK059808
Length = 116
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 21 GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVG 80
G +G + CC+GV+ L AA TTADR+ AC CLK+ A IK LN G A +P KCGV+V
Sbjct: 44 GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVP 103
Query: 81 FPISLSTDCNKVS 93
+ IS S DC++VS
Sbjct: 104 YTISASIDCSRVS 116
>Os12g0114800 Similar to Lipid transfer protein
Length = 121
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 32 GVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNK 91
GV+ LN A ++ADR+ AC CLK++A S ++LN+G A +P KCGV+V FPIS S DC+K
Sbjct: 60 GVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSK 119
Query: 92 V 92
+
Sbjct: 120 I 120
>Os11g0115100 Similar to Lipid transfer protein
Length = 121
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 32 GVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNK 91
GV+ LN A ++ADR+ AC CLK++A S ++LN+G A +P KCGV+V FPIS S DC+K
Sbjct: 60 GVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSK 119
Query: 92 V 92
+
Sbjct: 120 I 120
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%)
Query: 21 GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVG 80
G +G + CC+GV+ L AA +TADR+ AC CLK+ A IK LN G A +P KCGV+V
Sbjct: 44 GGAGPSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVP 103
Query: 81 FPISLSTDCNKVS 93
+ IS S DC++VS
Sbjct: 104 YTISASIDCSRVS 116
>AK058805
Length = 75
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%)
Query: 32 GVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFPISLSTDCNK 91
GV+ L AA +TADR+ AC CLK+ A IK LN G A +P KCGV+V + IS S DC++
Sbjct: 14 GVRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSR 73
Query: 92 VS 93
VS
Sbjct: 74 VS 75
>Os02g0445300
Length = 75
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 23 SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCGVNVGFP 82
S T GCC+GV+ LN+AA AD Q C C+K + L VAG+P KCGVN+ +
Sbjct: 8 SAPTGGCCDGVRTLNSAA---ADHQTTCACIKQQTSGMGGLRPDLVAGIPSKCGVNIPYA 64
Query: 83 ISLSTDCNKV 92
IS STDC++V
Sbjct: 65 ISPSTDCSRV 74
>Os05g0477900 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 129
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 25 LTQGCCNGVKGLNNAARTTADRQAACRCLKSL-AGSIKSLNLGTVAGVPGKCGVNVGFPI 83
+ CC G++ + AARTTADR+AAC CLK++ AG+ + AG+PG+CGV+V F I
Sbjct: 60 VPAACCGGIRSVVAAARTTADRRAACTCLKNVAAGAAGGPYISRAAGLPGRCGVSVPFKI 119
Query: 84 SLSTDCNKV 92
S + +CN V
Sbjct: 120 SPNVNCNAV 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,805,092
Number of extensions: 81904
Number of successful extensions: 272
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 20
Length of query: 93
Length of database: 17,035,801
Length adjustment: 62
Effective length of query: 31
Effective length of database: 13,798,533
Effective search space: 427754523
Effective search space used: 427754523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)