BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0615700 Os11g0615700|AK103487
(237 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) ... 491 e-139
Os06g0167600 Similar to Proteasome subunit alpha-3 (Fragment) 170 1e-42
Os06g0177100 169 2e-42
Os06g0176000 Proteasome subunit alpha type 4 (EC 3.4.25.1) ... 169 2e-42
Os02g0634900 Proteasome subunit alpha type 2 (EC 3.4.25.1) ... 161 5e-40
Os09g0538200 Proteasome subunit alpha type 7 (EC 3.4.25.1) ... 160 6e-40
Os08g0548900 Similar to Proteasome subunit alpha type 7 (EC... 160 1e-39
Os03g0387100 Proteasome subunit alpha type 2 (EC 3.4.25.1) ... 159 2e-39
Os02g0133800 Proteasome subunit alpha type 1 (EC 3.4.25.1) ... 142 2e-34
Os01g0811100 Proteasome subunit alpha type 3 (EC 3.4.25.1) ... 138 3e-33
Os03g0180400 Proteasome subunit alpha type 6 (EC 3.4.25.1) ... 133 1e-31
Os07g0468800 Similar to Proteasome subunit alpha type 4 (EC... 114 4e-26
Os07g0614100 Alpha 1-2 subunit of 20S proteasome 100 6e-22
Os05g0187000 Beta 2 subunit of 20S proteasome (20S proteaso... 68 5e-12
Os06g0153800 Beta 5 subunit of 20S proteasome 68 7e-12
>Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha
subunit E) (20S proteasome subunit alpha-5)
Length = 237
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLE 60
MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLE
Sbjct: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLE 60
Query: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLA 120
PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLA
Sbjct: 61 PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLA 120
Query: 121 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ
Sbjct: 121 LRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
Query: 181 EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAVIARL 237
EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAVIARL
Sbjct: 181 EQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAVIARL 237
>Os06g0167600 Similar to Proteasome subunit alpha-3 (Fragment)
Length = 250
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPS-SVEK 66
YD FSPEGRL+QVEYA+EAI +A+G+ DGVVL EK+VTS LL+ S S EK
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEK 64
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLA---LRF 123
+ +ID H+ CA++G+++DA L+ AR+ Q + SY EP+ VE Q++CD +F
Sbjct: 65 MYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQF 124
Query: 124 GEGDEESMSRPFGVSLLIAGHDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ 182
G RPFGVS L AG D+ +G LY +DPSG + A A+G+ S+ A S L++
Sbjct: 125 GG------LRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQD 178
Query: 183 YNKELTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218
Y LT +EA +AL +L + M+ +T +++A+V
Sbjct: 179 YRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215
>Os06g0177100
Length = 250
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPS-SVEK 66
YD FSPEGRL+QVEYA+EAI +A+G+ DGVVL EK+VTS LL+ S S EK
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEK 64
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLA---LRF 123
+ +ID H+ CA++G+++DA L+ AR+ Q + SY EP+ VE Q++CD +F
Sbjct: 65 MYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQF 124
Query: 124 GEGDEESMSRPFGVSLLIAGHDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ 182
G RPFGVS L AG D+ +G LY +DPSG + A A+G+ S+ A S L++
Sbjct: 125 GG------LRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQD 178
Query: 183 YNKELTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218
Y +T +EA +AL +L + M+ +T +++A+V
Sbjct: 179 YRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215
>Os06g0176000 Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha
subunit C) (20S proteasome subunit alpha-3)
Length = 250
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPS-SVEK 66
YD FSPEGRL+QVEYA+EAI +A+G+ DGVVL EK+VTS LL+ S S EK
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEK 64
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLA---LRF 123
+ +ID H+ CA++G+++DA L+ AR+ Q + SY EP+ VE Q++CD +F
Sbjct: 65 MYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQF 124
Query: 124 GEGDEESMSRPFGVSLLIAGHDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ 182
G RPFGVS L AG D+ +G LY +DPSG + A A+G+ S+ A S L++
Sbjct: 125 GG------LRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQD 178
Query: 183 YNKELTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218
Y +T +EA +AL +L + M+ +T +++A+V
Sbjct: 179 YRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215
>Os02g0634900 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha
subunit B) (20S proteasome subunit alpha-2)
Length = 235
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 140/228 (61%), Gaps = 5/228 (2%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVE 65
++Y + TFSP G+L Q+E+A+ A+ G T++G+K +GVV+A EK++ S L++ +SV+
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQ 63
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGE 125
KI + +IG SG+ D R LV +R + Q + Y E + V TQ + + A E
Sbjct: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPV---TQLVRETAAVMQE 120
Query: 126 GDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFGVSLLIAG+D+NGP LY DPSG+++ A A+G A + L+++Y +
Sbjct: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
Query: 186 ELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPN--YHLYTPAEVE 231
++ L +A A+ LK+ E +++ NN++I + + + + TPAE++
Sbjct: 181 DMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIK 228
>Os09g0538200 Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha
subunit D) (20S proteasome subunit alpha-4)
Length = 249
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 126/211 (59%), Gaps = 8/211 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKI 67
YDR + FSP+G LFQVEYA+EA++ G+ A+G++ D VVL VEK+ T L + SV KI
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKI 63
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGD 127
+D HI A +GL ADAR L+ ARVE Q+HR + + +TVE T+ I L ++
Sbjct: 64 ASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKY---T 120
Query: 128 EESMSRPFGVSLLIAGHD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFG+S LI G D + P+LY TDPSGTF A A G S L++ Y K
Sbjct: 121 QSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-K 179
Query: 186 ELTLQEAETIALSILKQVMEEKVTPNNVDIA 216
E + +E +A+ L +V+E N++IA
Sbjct: 180 ETSGKETIKLAIRALLEVVES--GGKNIEIA 208
>Os08g0548900 Similar to Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S
proteasome alpha subunit D) (20S proteasome subunit
alpha-4)
Length = 249
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 8/211 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKI 67
YDR + FSP+G LFQVEYA+EA++ G+ A+G++ D VVL VEK+ T L + S+ KI
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKI 63
Query: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGD 127
+D HI A +GL ADAR L+ ARVE Q+HR + +P+TVE T+ I L ++
Sbjct: 64 ASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKY---T 120
Query: 128 EESMSRPFGVSLLIAGHD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFG+S LI G D P+LY TDPSGTF A A G S L++ Y K
Sbjct: 121 QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-K 179
Query: 186 ELTLQEAETIALSILKQVMEEKVTPNNVDIA 216
+ + +E +A+ L +V+E N++IA
Sbjct: 180 DTSGKETIKLAIRALLEVVESG--GKNIEIA 208
>Os03g0387100 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha
subunit B) (20S proteasome subunit alpha-2)
Length = 235
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 140/228 (61%), Gaps = 5/228 (2%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVE 65
++Y + TFSP G+L Q+E+A+ A+ G T++G+K +GVV+A EK++ S L++ +SV+
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQ 63
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGE 125
KI + +IG SG+ D R LV +R + Q + Y E + V TQ + + A E
Sbjct: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPV---TQLVRETAAVMQE 120
Query: 126 GDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
+ RPFGVSLLIAG+D+NGP LY DPSG+++ A A+G A + L+++Y +
Sbjct: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
Query: 186 ELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPN--YHLYTPAEVE 231
++ L +A A+ LK+ E +++ NN++I + + + + +PAE++
Sbjct: 181 DMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIK 228
>Os02g0133800 Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S proteasome alpha
subunit F) (20S proteasome subunit alpha-6) (Proteasome
component C2)
Length = 270
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 16/223 (7%)
Query: 3 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPS 62
+ R +YD V T+SP GRLFQVEYA+EA+K GS +GL+++ VLA + S L S
Sbjct: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SS 58
Query: 63 SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALR 122
K+ + +H G A++GL AD R L R E NH F Y P+ V LALR
Sbjct: 59 HQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSR-------LALR 111
Query: 123 FGEG----DEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSS 178
+ + S RP+GV LL+AG DE+G LYY PSG +++ A AIGS S+ A +
Sbjct: 112 LADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTF 171
Query: 179 LQEQYN--KELTLQEAETIALSILKQVME-EKVTPNNVDIAKV 218
L+ ++ + T ++ ALS +K+ ++ EK+T +N +A V
Sbjct: 172 LERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214
>Os01g0811100 Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha
subunit G) (20S proteasome subunit alpha-7)
Length = 249
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVE 65
T YD V TFSP+GR+FQVEYA +A+ T +G+K KDG+VL VEK VTS ++ S
Sbjct: 6 TGYDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNR 65
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAI------CDL 119
+I + H G A++GL AD R +V A+ E ++ YGEP++V+ + C L
Sbjct: 66 RIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTL 125
Query: 120 ALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSL 179
RPFG +++ G+D +GP LY +PSG ++ A+G G + A + +
Sbjct: 126 YWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEI 176
Query: 180 QEQYNKELTLQEAETIALSILKQVMEE 206
++ ELT +E I+ V +E
Sbjct: 177 EKLKLSELTCREGIVEVAKIIYGVHDE 203
>Os03g0180400 Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S proteasome alpha
subunit A) (20S proteasome subunit alpha-1)
Length = 246
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 127/230 (55%), Gaps = 7/230 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEK 66
YDR + FSPEGRL+QVEYA +A+K G T+IG++ KD V + +K+V LL+ +SV
Sbjct: 9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTH 68
Query: 67 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEG 126
+ I ++IG +GL ADAR+LV AR E RF +G M V+ + I D A +
Sbjct: 69 LFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVY--- 125
Query: 127 DEESMSRPFGVSLLIAGHD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQY-- 183
+ + RP GV ++ G+D E L+ DP+G F+ A + G + A + L+++
Sbjct: 126 TQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKD 185
Query: 184 NKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAV 233
+ + + +E IA+S L+ V++E +++ V + ++ E +
Sbjct: 186 DPQFSYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEI 235
>Os07g0468800 Similar to Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S
proteasome alpha subunit C) (20S proteasome subunit
alpha-3)
Length = 207
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 10/139 (7%)
Query: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPS-SVE 65
YD + FSPEGRL+QV+YA+EAI +A+ + DGVVL EK+VTS LL+ S S E
Sbjct: 55 RYDSRMTIFSPEGRLYQVQYAMEAIGNAGSALCVLAADGVVLVGEKKVTSKLLQTSCSAE 114
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLA---LR 122
K+ +ID H+ CA++G+++DA L+ AR+ Q + SY EP+ VE Q++C +
Sbjct: 115 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYILSYQEPIPVEQLIQSLCHTKQGYTQ 174
Query: 123 FGEGDEESMSRPFGVSLLI 141
FG RPFGVS L
Sbjct: 175 FGG------LRPFGVSFLF 187
>Os07g0614100 Alpha 1-2 subunit of 20S proteasome
Length = 253
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 11/205 (5%)
Query: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVE 65
+Y+R + FSPEGRL Q++YA A+KL G T++G++ D V + + R L +P+++
Sbjct: 22 DYERFITLFSPEGRLCQLDYAFNAVKLAGITSVGVRGDDSVYV-LTHRKEDKLHDPTTIT 80
Query: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLA-LRFG 124
+ I + IG +G+ D R + + AR RF +G M+ Q I D A +R
Sbjct: 81 NLFAITDRIGLLATGMPGDGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIR-- 138
Query: 125 EGDEESMSRPFGVSLLIAGHDE--NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ 182
+ + RP+GV +I G DE P L+ DP+G F+ A + G + + L+E+
Sbjct: 139 --TQHAQIRPYGVVSMIFGIDEEKGTPELFTCDPAGQFFAHKATSAGPKEKEVMNFLEER 196
Query: 183 YNKELTLQEAET--IALSILKQVME 205
+ +L T +A S LK V+E
Sbjct: 197 MKSKPSLSSGTTKGLAKSALKHVLE 221
>Os05g0187000 Beta 2 subunit of 20S proteasome (20S proteasome beta subunit)
Length = 272
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 31 IKLGSTAIGLKTKDGVVLAVEKRVT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLV 89
+K G+T +GL +DGVVL + R T P++ + EKI + +I C +G AD +
Sbjct: 35 LKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 94
Query: 90 EHARVETQNHRFSYG-EPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENG 148
+ + Q HR++ G E V S T L G +L++ G D G
Sbjct: 95 DMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGH---------VSAALVLGGVDVTG 145
Query: 149 PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEA-ETIALSILKQVMEEK 207
P L+ P G+ +GSGS A S + +Y + LT +E + +A +I + +
Sbjct: 146 PHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDL 205
Query: 208 VTPNNVDIAKVS 219
+ +NVD+ ++
Sbjct: 206 GSGSNVDVCVIT 217
>Os06g0153800 Beta 5 subunit of 20S proteasome
Length = 277
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 13/194 (6%)
Query: 32 KLGSTAIGLKTKDGVVLAVEKRVT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVE 90
K G+T + GV++A + R + + +V KI+EI+ ++ M+G AD +
Sbjct: 58 KKGTTTLAFIFDKGVIVAADSRASMGGYISSQTVRKIIEINPYMLGTMAGGAADCQFWHR 117
Query: 91 HARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSL--LIAGHDENG 148
+ ++ + H + +++ ++ + ++ + R G+S+ +IAG DE G
Sbjct: 118 NLGIKCRLHELANKRRISIAGASKLLANILYSY---------RGMGLSIGTMIAGWDEKG 168
Query: 149 PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIA-LSILKQVMEEK 207
P LYY D G + ++GSGS A L E Y + ++EA +A +I + +
Sbjct: 169 PGLYYVDSEGARLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATFRDG 228
Query: 208 VTPNNVDIAKVSPN 221
+ V + V PN
Sbjct: 229 ASGGCVSVYHVGPN 242
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,578,492
Number of extensions: 302373
Number of successful extensions: 544
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 15
Length of query: 237
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 139
Effective length of database: 11,918,829
Effective search space: 1656717231
Effective search space used: 1656717231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)