FiT-DB / Search/ Help/ Sample detail

Os09g0538200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.011) R2 : 0.478
β1 : 0.792 (0.0402) R2dD : 0.462 R2D : 0.354
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.21 (0.0234) R2dN8 : 0.124 R2N8 : 0.0157
σ : 0.206
deviance : 19.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.83 0.162 12.8 0.948 0.335 -0.268 -0.304 0.853 0.188 19.8 33.3 1174 -- --
11.87 0.16 12.8 0.826 0.348 -0.178 -0.335 -- 0.192 19.7 33.89 1173 -- --
12.08 0.162 12.8 0.955 0.333 -0.272 -- 0.865 0.186 19.7 33.7 1354 -- --
12.11 0.162 12.8 0.834 0.337 -0.174 -- -- 0.189 19.7 33.7 1115 -- --
18.07 0.198 12.7 0.906 -- -0.234 -- 0.599 0.182 -- 33.8 1373 -- --
13.23 0.171 12.8 0.789 0.332 -- -0.303 -- 0.216 19.6 -- -- -- --
13.48 0.172 12.8 0.797 0.333 -- -- -- 0.215 19.4 -- -- -- --
18.07 0.198 12.8 0.83 -- -0.168 -- -- 0.183 -- 33.7 1373 -- --
29.97 0.255 12.8 -- 0.325 -0.0751 -- -- 0.115 19.7 33.9 1063 -- --
19.4 0.206 12.8 0.792 -- -- -- -- 0.21 -- -- -- -- --
30.23 0.257 12.8 -- 0.326 -- -- -- 0.127 19.6 -- -- -- --
33.41 0.269 12.8 -- -- 0.293 -- -- 0.0988 -- 24.2 599 -- --
35.94 0.28 12.8 -- -- -- -- -- 0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.35 wind 7.0 270 < th dose independent rect. 15 14
4 11.58 radiation 40.0 270 < th dose independent rect. 15 14
5 11.60 temperature 10.0 270 > th dose independent rect. 5 10
6 11.60 atmosphere 1015.0 270 < th dose independent rect. 5 10
7 11.60 temperature 10.0 270 > th dose independent rect. 15 14
8 11.60 temperature 10.0 270 > th dose dependent rect. 24 9
10 11.61 precipitation 0.1 270 < th dose independent rect. 5 10
11 11.61 radiation 30.0 90 < th dose independent rect. 3 17
12 11.61 precipitation 0.1 270 < th dose dependent rect. 5 10
13 11.62 precipitation 0.1 270 < th dose independent rect. 15 14
14 11.62 precipitation 0.1 270 < th dose dependent rect. 15 14
16 11.64 atmosphere 995.0 270 > th dose independent rect. 5 10
17 11.65 wind 9.0 270 < th dose independent rect. 5 10
19 11.65 radiation 40.0 90 < th dose dependent rect. 3 17
21 11.66 radiation 40.0 270 < th dose dependent rect. 24 11
30 11.72 radiation 40.0 270 < th dose independent rect. 24 11
33 11.72 wind 9.0 43200 > th dose dependent rect. 13 20
35 11.73 humidity 50.0 1440 > th dose independent rect. 16 1
44 11.73 humidity 60.0 1440 < th dose dependent rect. 16 17
48 11.74 wind 3.0 43200 < th dose dependent rect. 9 1
49 11.74 humidity 60.0 1440 < th dose dependent rect. 16 1
72 11.75 wind 1.0 43200 > th dose independent rect. 8 2
73 11.75 temperature 15.0 90 > th dose independent rect. 20 7
80 11.76 wind 1.0 43200 < th dose independent rect. 8 2
81 11.76 humidity 50.0 1440 > th dose independent rect. 15 3
84 11.76 humidity 50.0 1440 > th dose independent rect. 15 9
86 11.76 humidity 50.0 1440 > th dose independent rect. 15 12
90 11.76 wind 9.0 43200 > th dose dependent sin 19 NA
91 11.76 temperature 30.0 1440 > th dose dependent rect. 17 1
111 11.77 humidity 60.0 1440 > th dose independent rect. 17 6
124 11.77 radiation 40.0 270 < th dose independent rect. 1 16
126 11.77 radiation 10.0 10 < th dose independent rect. 3 17
132 11.77 temperature 15.0 270 > th dose dependent rect. 1 4
137 11.77 wind 9.0 43200 > th dose dependent rect. 9 12
140 11.78 humidity 60.0 1440 < th dose independent rect. 17 1
144 11.78 temperature 15.0 10 > th dose independent rect. 20 7
177 11.79 humidity 50.0 1440 < th dose independent rect. 16 19
178 11.79 wind 9.0 43200 > th dose dependent sin 13 NA
179 11.79 wind 5.0 43200 > th dose dependent rect. 15 1
187 11.80 humidity 50.0 1440 < th dose independent sin 11 NA
189 11.80 temperature 30.0 1440 < th dose independent rect. 18 3
192 11.80 temperature 30.0 1440 < th dose independent rect. 18 5
201 11.80 wind 9.0 43200 > th dose independent rect. 17 21
202 11.80 radiation 1.0 43200 < th dose dependent rect. 19 2
207 11.80 wind 3.0 43200 > th dose dependent rect. 7 10
214 11.80 temperature 10.0 30 > th dose dependent rect. 3 17
218 11.81 humidity 50.0 1440 > th dose independent sin 11 NA
234 11.81 wind 5.0 43200 < th dose independent rect. 9 8
262 11.81 humidity 60.0 1440 < th dose dependent sin 12 NA
293 11.82 wind 5.0 43200 > th dose independent rect. 15 1
294 11.82 temperature 30.0 720 > th dose independent rect. 18 1
301 11.82 wind 5.0 43200 > th dose independent rect. 9 8
344 11.83 wind 9.0 43200 < th dose independent rect. 18 20
346 11.83 wind 9.0 43200 > th dose independent rect. 13 22
358 11.83 radiation 40.0 90 < th dose dependent rect. 3 9
367 11.83 wind 7.0 43200 > th dose dependent rect. 6 15
368 11.83 wind 9.0 90 < th dose dependent rect. 16 15
420 11.84 wind 9.0 43200 < th dose independent rect. 13 21
427 11.84 wind 3.0 43200 > th dose dependent rect. 9 7
433 11.84 wind 7.0 43200 > th dose dependent rect. 6 10
445 11.85 humidity 80.0 43200 < th dose independent rect. 21 4
454 11.85 humidity 80.0 43200 > th dose independent rect. 21 8
456 11.85 temperature 20.0 270 > th dose independent rect. 24 9
463 11.85 wind 5.0 43200 > th dose independent rect. 6 12
468 11.85 wind 9.0 43200 > th dose independent rect. 6 15
481 11.85 wind 3.0 43200 > th dose dependent sin 0 NA
511 11.85 temperature 10.0 270 > th dose dependent rect. 1 18
515 11.86 humidity 80.0 43200 > th dose independent rect. 24 1
520 11.86 wind 5.0 43200 > th dose independent rect. 11 5
541 11.86 wind 9.0 43200 < th dose independent rect. 6 15
544 11.86 radiation 40.0 1440 < th dose independent rect. 17 15
548 11.86 wind 9.0 10 < th dose independent rect. 3 17
549 11.86 wind 9.0 90 < th dose independent rect. 3 17
552 11.86 wind 9.0 43200 > th dose independent rect. 23 22
563 11.86 wind 9.0 43200 < th dose dependent rect. 8 8
568 11.86 humidity 50.0 90 > th dose dependent rect. 3 9
574 11.86 wind 3.0 90 < th dose dependent rect. 2 10
603 11.87 wind 5.0 43200 < th dose independent rect. 15 1
607 11.87 humidity 80.0 43200 > th dose independent rect. 22 4
614 11.87 wind 9.0 90 < th dose independent rect. 20 7
616 11.87 temperature 30.0 90 < th dose independent rect. 20 7
617 11.87 humidity 50.0 90 > th dose independent rect. 20 7
621 11.87 atmosphere 995.0 90 > th dose independent rect. 20 7
622 11.87 radiation 1.0 90 < th dose independent rect. 20 7
627 11.87 precipitation 0.1 90 < th dose independent rect. 20 7
639 11.87 atmosphere 995.0 270 > th dose independent rect. 15 14
643 11.87 temperature 10.0 90 > th dose independent rect. 3 17
644 11.87 atmosphere 1015.0 90 < th dose independent rect. 3 17
647 11.87 wind 9.0 43200 > th dose independent rect. 20 18
676 11.87 radiation 1.0 90 < th dose dependent rect. 20 7
681 11.87 precipitation 0.1 90 < th dose dependent rect. 20 7
717 11.88 wind 5.0 43200 < th dose independent sin 23 NA
738 11.88 wind 9.0 43200 > th dose independent rect. 6 19
741 11.88 wind 9.0 43200 < th dose independent rect. 20 19
742 11.88 wind 9.0 43200 > th dose independent rect. 6 21
806 11.89 wind 5.0 43200 > th dose independent sin 23 NA
810 11.89 temperature 20.0 270 > th dose independent rect. 1 4
815 11.89 wind 1.0 270 > th dose independent rect. 5 10
833 11.89 atmosphere 995.0 90 > th dose independent rect. 3 17
855 11.89 wind 7.0 43200 > th dose dependent sin 0 NA
917 11.90 wind 5.0 14400 < th dose independent rect. 12 1
918 11.90 humidity 80.0 43200 < th dose independent rect. 24 1
934 11.90 atmosphere 1010.0 90 < th dose independent rect. 20 7
935 11.90 precipitation 0.1 10 < th dose independent rect. 20 7
940 11.90 wind 9.0 43200 < th dose independent rect. 6 9
965 11.90 precipitation 0.1 10 < th dose independent rect. 3 17
997 11.90 wind 5.0 10 < th dose dependent rect. 3 6