Os01g0811100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7).
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Os01g0811100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.17 | 0.177 | 13.2 | -0.571 | 0.209 | 0.101 | 0.0159 | -0.898 | -0.0097 | 21.9 | 21.9 | 2166 | -- | -- |
| 15.05 | 0.181 | 13.2 | -0.388 | 0.221 | 0.338 | -0.112 | -- | 0.0341 | 21.9 | 18.4 | 2942 | -- | -- |
| 14.17 | 0.175 | 13.2 | -0.571 | 0.209 | 0.101 | -- | -0.897 | -0.00939 | 21.8 | 21.9 | 2167 | -- | -- |
| 15.05 | 0.181 | 13.2 | -0.387 | 0.217 | 0.335 | -- | -- | 0.041 | 21.6 | 18.43 | 2735 | -- | -- |
| 16.76 | 0.191 | 13.2 | -0.575 | -- | 0.124 | -- | -0.889 | -0.00863 | -- | 21.9 | 2191 | -- | -- |
| 16.52 | 0.191 | 13.1 | -0.236 | 0.217 | -- | -0.0789 | -- | 0.101 | 21.9 | -- | -- | -- | -- |
| 16.55 | 0.19 | 13.1 | -0.233 | 0.217 | -- | -- | -- | 0.101 | 21.9 | -- | -- | -- | -- |
| 17.53 | 0.195 | 13.2 | -0.399 | -- | 0.354 | -- | -- | 0.0319 | -- | 18.46 | 2379 | -- | -- |
| 17.83 | 0.197 | 13.1 | -- | 0.209 | 0.103 | -- | -- | 0.109 | 21.4 | 18.3 | 2374 | -- | -- |
| 19.38 | 0.206 | 13.1 | -0.23 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 17.97 | 0.198 | 13.1 | -- | 0.216 | -- | -- | -- | 0.127 | 21.8 | -- | -- | -- | -- |
| 20.38 | 0.21 | 13.1 | -- | -- | -0.106 | -- | -- | 0.154 | -- | 20.4 | 13215 | -- | -- |
| 20.77 | 0.213 | 13.1 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 2 | 13.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 7 | 13.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 10 | 13.29 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 11 | 13.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 30 | 13.39 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 44 | 13.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 48 | 13.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 64 | 13.47 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 72 | 13.48 | humidity | 90 | 14400 | > th | dose dependent | sin | 9 | NA |
| 92 | 13.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 103 | 13.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 113 | 13.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 140 | 13.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 190 | 13.65 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 198 | 13.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 224 | 13.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 225 | 13.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 244 | 13.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 262 | 13.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 274 | 13.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 276 | 13.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 287 | 13.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 293 | 13.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 295 | 13.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 420 | 13.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 465 | 13.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 483 | 13.87 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 484 | 13.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 627 | 13.94 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 658 | 13.95 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 665 | 13.96 | humidity | 90 | 14400 | < th | dose independent | sin | 11 | NA |
| 676 | 13.97 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 680 | 13.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 695 | 13.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 709 | 13.98 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 733 | 13.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 738 | 13.99 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 749 | 13.99 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 759 | 14.00 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 760 | 14.00 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 767 | 14.00 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 804 | 14.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 876 | 14.05 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 906 | 14.07 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 937 | 14.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 943 | 14.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 956 | 14.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 976 | 14.10 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 977 | 14.10 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 982 | 14.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 991 | 14.10 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 994 | 14.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 997 | 14.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |