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Os06g0176000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.17 (0.0199) R2 : 0.604
β1 : 1.19 (0.0729) R2dD : 0.239 R2D : 0.257
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.734 (0.0425) R2dN8 : 0.347 R2N8 : 0.365
σ : 0.374
deviance : 63.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.07 0.339 9.22 0.798 0.0631 0.413 -0.639 -1 -0.896 5.59 20.5 874 -- --
53.64 0.341 9.19 0.931 0.0466 0.669 -0.689 -- -0.856 5.13 19.4 1095 -- --
52.95 0.339 9.22 0.781 0.0675 0.428 -- -0.985 -0.892 7.87 20.6 904 -- --
53.5 0.341 9.19 0.825 0.00141 0.794 -- -- -0.847 4.85 18.3 2410 -- --
53.18 0.34 9.22 0.787 -- 0.432 -- -0.974 -0.895 -- 20.57 942 -- --
62.06 0.369 9.17 1.17 0.0676 -- -0.749 -- -0.74 3.7 -- -- -- --
63.75 0.374 9.17 1.18 0.0638 -- -- -- -0.736 3.83 -- -- -- --
53.45 0.34 9.19 0.826 -- 0.824 -- -- -0.859 -- 18.3 2410 -- --
63.67 0.372 9.24 -- 0.0503 1.25 -- -- -1.05 5.69 18.1 10896 -- --
63.98 0.374 9.17 1.19 -- -- -- -- -0.734 -- -- -- -- --
100.73 0.469 9.2 -- 0.087 -- -- -- -0.868 3.68 -- -- -- --
62.72 0.369 9.25 -- -- 1.05 -- -- -1.08 -- 17.23 47520 -- --
101.15 0.469 9.2 -- -- -- -- -- -0.866 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.41 radiation 1 1440 < th dose independent rect. 13 1
2 51.41 radiation 1 1440 < th dose dependent rect. 13 1
3 51.56 radiation 1 1440 < th dose independent rect. 10 4
4 51.56 radiation 1 1440 < th dose dependent rect. 10 4
5 51.93 radiation 1 1440 > th dose independent rect. 13 1
12 52.01 radiation 20 14400 < th dose independent rect. 3 3
15 52.17 temperature 20 720 > th dose independent rect. 12 19
16 52.19 radiation 1 1440 > th dose independent rect. 10 4
19 52.36 temperature 20 720 > th dose independent rect. 18 22
31 52.56 temperature 20 720 < th dose independent rect. 10 21
35 52.57 temperature 20 720 > th dose independent rect. 10 22
40 52.60 temperature 20 720 < th dose independent rect. 23 21
43 52.63 temperature 20 720 > th dose independent rect. 12 23
52 52.69 temperature 20 720 > th dose independent rect. 23 23
61 52.73 temperature 20 720 > th dose independent rect. 1 23
62 52.74 temperature 20 720 > th dose independent rect. 1 21
81 52.80 temperature 20 720 > th dose independent rect. 21 23
90 52.86 wind 9 43200 > th dose dependent rect. 10 4
105 52.91 temperature 20 720 > th dose independent no NA NA
115 52.94 temperature 20 720 > th dose independent rect. 3 23
122 52.97 temperature 20 720 < th dose independent rect. 18 23
123 52.98 temperature 20 720 < th dose independent no NA NA
134 53.00 wind 7 14400 > th dose dependent rect. 21 17
137 53.02 wind 3 43200 > th dose independent rect. 2 1
144 53.03 humidity 80 43200 < th dose dependent rect. 21 3
145 53.04 wind 3 43200 < th dose independent rect. 1 2
148 53.06 wind 7 4320 > th dose independent rect. 15 2
153 53.06 humidity 80 43200 < th dose dependent rect. 21 10
157 53.07 humidity 80 43200 < th dose dependent rect. 23 1
160 53.07 wind 7 14400 > th dose dependent rect. 6 6
162 53.07 temperature 20 720 < th dose dependent rect. 12 18
170 53.09 temperature 20 720 < th dose independent rect. 15 23
174 53.10 radiation 20 14400 < th dose independent rect. 1 5
188 53.12 wind 9 43200 > th dose dependent rect. 9 7
199 53.15 radiation 30 4320 < th dose independent rect. 6 2
203 53.15 temperature 20 720 < th dose independent rect. 3 23
217 53.18 radiation 30 4320 < th dose independent rect. 20 12
220 53.18 temperature 20 720 > th dose independent rect. 14 23
222 53.19 radiation 30 4320 < th dose independent rect. 22 10
229 53.20 temperature 20 4320 < th dose independent rect. 19 1
230 53.20 radiation 30 4320 < th dose independent rect. 24 8
247 53.22 wind 9 43200 > th dose independent rect. 6 8
252 53.23 wind 7 4320 > th dose independent rect. 15 4
258 53.23 humidity 80 43200 < th dose dependent rect. 4 1
266 53.25 wind 3 43200 < th dose independent rect. 23 4
271 53.26 temperature 20 720 > th dose independent rect. 3 13
273 53.26 temperature 20 720 > th dose independent rect. 23 18
279 53.27 wind 9 43200 > th dose independent rect. 3 11
283 53.27 wind 7 14400 > th dose dependent sin 6 NA
285 53.27 humidity 80 43200 < th dose dependent rect. 3 4
294 53.28 wind 9 43200 > th dose independent rect. 23 15
295 53.28 temperature 20 720 > th dose independent rect. 1 15
350 53.35 temperature 20 4320 > th dose independent rect. 19 1
351 53.35 wind 7 4320 < th dose independent rect. 15 2
369 53.36 temperature 20 1440 < th dose dependent rect. 2 19
385 53.38 temperature 15 4320 < th dose dependent rect. 23 17
397 53.39 temperature 20 1440 < th dose dependent sin 17 NA
417 53.41 wind 1 43200 < th dose dependent rect. 9 3
418 53.41 temperature 15 4320 < th dose dependent rect. 23 6
432 53.42 wind 7 14400 > th dose dependent rect. 11 1
435 53.42 temperature 15 4320 < th dose dependent rect. 23 12
479 53.45 temperature 20 1440 < th dose dependent rect. 22 22
483 53.46 wind 9 43200 > th dose independent sin 4 NA
503 53.47 wind 9 43200 < th dose independent rect. 3 11
506 53.47 temperature 15 4320 < th dose dependent sin 8 NA
520 53.48 wind 7 4320 < th dose independent rect. 15 4
525 53.48 wind 5 43200 < th dose dependent rect. 1 1
536 53.49 wind 9 43200 < th dose independent rect. 5 9
540 53.49 temperature 20 1440 < th dose dependent no NA NA
557 53.50 wind 9 43200 > th dose dependent sin 0 NA
568 53.51 wind 9 43200 < th dose independent rect. 23 15
606 53.54 wind 1 43200 > th dose independent rect. 9 4
608 53.54 humidity 80 43200 < th dose independent rect. 23 7
646 53.56 radiation 20 4320 > th dose dependent rect. 6 2
674 53.56 temperature 20 1440 < th dose dependent rect. 17 23
676 53.57 wind 7 14400 > th dose independent rect. 11 1
747 53.60 humidity 80 43200 > th dose independent rect. 4 1
748 53.60 humidity 80 43200 > th dose independent rect. 1 5
774 53.61 wind 1 43200 < th dose independent rect. 9 4
777 53.61 humidity 80 43200 < th dose independent rect. 23 4
794 53.62 humidity 80 43200 < th dose independent rect. 23 2
812 53.63 wind 9 43200 < th dose independent sin 4 NA
866 53.66 temperature 15 4320 < th dose dependent rect. 24 3
934 53.69 wind 7 14400 > th dose dependent rect. 19 19
957 53.71 radiation 10 4320 < th dose dependent rect. 3 2
960 53.71 humidity 50 43200 < th dose dependent rect. 20 13
969 53.72 wind 3 43200 > th dose independent rect. 19 12
988 53.73 wind 3 43200 < th dose independent rect. 20 11
992 53.73 temperature 20 1440 < th dose dependent sin 0 NA