Os08g0548900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4).
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Os08g0548900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.48 | 0.228 | 13 | 0.577 | 0.936 | -0.0781 | -0.452 | -2.19 | 0.269 | 23.3 | 31.9 | 1536 | -- | -- |
| 23.74 | 0.227 | 13 | 0.9 | 0.933 | -0.252 | -0.408 | -- | 0.301 | 23.2 | 33.41 | 1495 | -- | -- |
| 24.35 | 0.23 | 13 | 0.576 | 0.934 | -0.073 | -- | -2.29 | 0.269 | 23.3 | 32.05 | 1537 | -- | -- |
| 24.46 | 0.23 | 13 | 0.917 | 0.951 | -0.287 | -- | -- | 0.28 | 23.2 | 33.1 | 1493 | -- | -- |
| 76.85 | 0.411 | 12.9 | 0.926 | -- | -0.765 | -- | 0.834 | 0.308 | -- | 29.88 | 1646 | -- | -- |
| 27.73 | 0.247 | 13 | 0.821 | 0.913 | -- | -0.494 | -- | 0.324 | 23.2 | -- | -- | -- | -- |
| 28.77 | 0.251 | 13 | 0.841 | 0.915 | -- | -- | -- | 0.326 | 23.2 | -- | -- | -- | -- |
| 69.25 | 0.389 | 12.9 | 0.953 | -- | -0.777 | -- | -- | 0.341 | -- | 26.7 | 1590 | -- | -- |
| 45.53 | 0.314 | 13 | -- | 0.95 | -0.21 | -- | -- | 0.193 | 23.3 | 33.6 | 972 | -- | -- |
| 81.09 | 0.421 | 12.9 | 0.863 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 47.41 | 0.322 | 13 | -- | 0.923 | -- | -- | -- | 0.232 | 23.3 | -- | -- | -- | -- |
| 90.88 | 0.445 | 12.9 | -- | -- | -0.799 | -- | -- | 0.329 | -- | 12.75 | 843 | -- | -- |
| 100.74 | 0.468 | 13 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.16 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 24 | 19 |
| 2 | 23.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 5 | 23.23 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 6 | 23.23 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 11 | 23.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 12 | 23.26 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 74 | 23.41 | humidity | 60.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 109 | 23.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 116 | 23.45 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 118 | 23.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 126 | 23.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 149 | 23.48 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 209 | 23.52 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 225 | 23.56 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 232 | 23.57 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 285 | 23.62 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 286 | 23.62 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 295 | 23.63 | humidity | 60.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 337 | 23.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 348 | 23.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 421 | 23.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 449 | 23.70 | humidity | 60.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 541 | 23.73 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 647 | 23.74 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 715 | 23.77 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 740 | 23.77 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 804 | 23.79 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 856 | 23.82 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 859 | 23.82 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 862 | 23.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 946 | 23.86 | temperature | 30.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 948 | 23.86 | temperature | 30.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 949 | 23.86 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 4 |