BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0548900 Os08g0548900|AK061808
(249 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0548900 Similar to Proteasome subunit alpha type 7 (EC... 473 e-134
Os09g0538200 Proteasome subunit alpha type 7 (EC 3.4.25.1) ... 458 e-129
Os06g0177100 175 4e-44
Os06g0176000 Proteasome subunit alpha type 4 (EC 3.4.25.1) ... 175 4e-44
Os06g0167600 Similar to Proteasome subunit alpha-3 (Fragment) 174 5e-44
Os02g0634900 Proteasome subunit alpha type 2 (EC 3.4.25.1) ... 163 9e-41
Os03g0387100 Proteasome subunit alpha type 2 (EC 3.4.25.1) ... 163 1e-40
Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) ... 160 1e-39
Os03g0180400 Proteasome subunit alpha type 6 (EC 3.4.25.1) ... 145 3e-35
Os07g0468800 Similar to Proteasome subunit alpha type 4 (EC... 121 6e-28
Os01g0811100 Proteasome subunit alpha type 3 (EC 3.4.25.1) ... 118 3e-27
Os02g0133800 Proteasome subunit alpha type 1 (EC 3.4.25.1) ... 117 7e-27
Os07g0614100 Alpha 1-2 subunit of 20S proteasome 106 1e-23
>Os08g0548900 Similar to Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S
proteasome alpha subunit D) (20S proteasome subunit
alpha-4)
Length = 249
Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSM 60
MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSM
Sbjct: 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSM 60
Query: 61 RKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120
RKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT
Sbjct: 61 RKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120
Query: 121 QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD 180
QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD
Sbjct: 121 QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD 180
Query: 181 TSGKETIKLAIRALLEVVESGGKNIEIAVMTHKDGLRELEEAEIDEYV 228
TSGKETIKLAIRALLEVVESGGKNIEIAVMTHKDGLRELEEAEIDEYV
Sbjct: 181 TSGKETIKLAIRALLEVVESGGKNIEIAVMTHKDGLRELEEAEIDEYV 228
>Os09g0538200 Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha
subunit D) (20S proteasome subunit alpha-4)
Length = 249
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/228 (96%), Positives = 226/228 (99%)
Query: 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSM 60
MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRG+DTVVLGVEKKSTPKLQDSRS+
Sbjct: 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSV 60
Query: 61 RKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120
RKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVED VTVEYITRYIAGLQQKYT
Sbjct: 61 RKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYT 120
Query: 121 QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD 180
QSGGVRPFGLSTLIVGFDPYT+KPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK+
Sbjct: 121 QSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE 180
Query: 181 TSGKETIKLAIRALLEVVESGGKNIEIAVMTHKDGLRELEEAEIDEYV 228
TSGKETIKLAIRALLEVVESGGKNIEIAVMT KDGLR+LEEAEIDEYV
Sbjct: 181 TSGKETIKLAIRALLEVVESGGKNIEIAVMTQKDGLRQLEEAEIDEYV 228
>Os06g0177100
Length = 250
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 143/223 (64%), Gaps = 6/223 (2%)
Query: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMR 61
RYD T+FSP+G L+QVEYA+EA+ +A+GV D VVL EKK T KL Q SRS
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121
K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 122 SGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD- 180
GG+RPFG+S L G+D + LY +DPSG +S WKA A G NS + + L+++Y+D
Sbjct: 124 FGGLRPFGVSFLFAGWDKH-HGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDG 182
Query: 181 TSGKETIKLAIRALLEVVES---GGKNIEIAVMTHKDGLRELE 220
+ +E + LA++ L + ++S + +E+A + + G E++
Sbjct: 183 MTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQ 225
>Os06g0176000 Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha
subunit C) (20S proteasome subunit alpha-3)
Length = 250
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 143/223 (64%), Gaps = 6/223 (2%)
Query: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMR 61
RYD T+FSP+G L+QVEYA+EA+ +A+GV D VVL EKK T KL Q SRS
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121
K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 122 SGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD- 180
GG+RPFG+S L G+D + LY +DPSG +S WKA A G NS + + L+++Y+D
Sbjct: 124 FGGLRPFGVSFLFAGWDKH-HGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDG 182
Query: 181 TSGKETIKLAIRALLEVVES---GGKNIEIAVMTHKDGLRELE 220
+ +E + LA++ L + ++S + +E+A + + G E++
Sbjct: 183 MTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQ 225
>Os06g0167600 Similar to Proteasome subunit alpha-3 (Fragment)
Length = 250
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 143/223 (64%), Gaps = 6/223 (2%)
Query: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMR 61
RYD T+FSP+G L+QVEYA+EA+ +A+GV D VVL EKK T KL Q SRS
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121
K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 122 SGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD- 180
GG+RPFG+S L G+D + LY +DPSG +S WKA A G NS + + L+++Y+D
Sbjct: 124 FGGLRPFGVSFLFAGWDKH-HGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDG 182
Query: 181 TSGKETIKLAIRALLEVVES---GGKNIEIAVMTHKDGLRELE 220
+ +E + LA++ L + ++S + +E+A + + G E++
Sbjct: 183 LTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQ 225
>Os02g0634900 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha
subunit B) (20S proteasome subunit alpha-2)
Length = 235
Score = 163 bits (413), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Query: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMR 61
++Y ++T FSP G L Q+E+AL AV G ++G++ + VV+ EKK L D S++
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQ 63
Query: 62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121
KI SL +I + +G+ D RVL+ ++R + Q + ++ + V + R A + Q++TQ
Sbjct: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQ 123
Query: 122 SGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KD 180
SGGVRPFG+S LI G+D P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y +D
Sbjct: 124 SGGVRPFGVSLLIAGYD--DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED 181
Query: 181 TSGKETIKLAIRALLEVVES--GGKNIEIAVMTHKDGLRELEEAEIDEYV 228
+ I AI L E E NIEI V+ + L AEI +++
Sbjct: 182 MELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFL 231
>Os03g0387100 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha
subunit B) (20S proteasome subunit alpha-2)
Length = 235
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Query: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMR 61
++Y ++T FSP G L Q+E+AL AV G ++G++ + VV+ EKK L D S++
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQ 63
Query: 62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121
KI SL +I + +G+ D RVL+ ++R + Q + ++ + V + R A + Q++TQ
Sbjct: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQ 123
Query: 122 SGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KD 180
SGGVRPFG+S LI G+D P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y +D
Sbjct: 124 SGGVRPFGVSLLIAGYD--DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED 181
Query: 181 TSGKETIKLAIRALLEVVES--GGKNIEIAVMTHKDGLRELEEAEIDEYV 228
+ I AI L E E NIEI ++ + L AEI +++
Sbjct: 182 MELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFL 231
>Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha
subunit E) (20S proteasome subunit alpha-5)
Length = 237
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 8/211 (3%)
Query: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKI 63
YDR + FSP+G LFQVEYA+EA++ G+ A+G++ D VVL VEK+ T L + S+ KI
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKI 67
Query: 64 ASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKY---T 120
+D HI A +GL ADAR L+ ARVE Q+HR + +P+TVE T+ I L ++
Sbjct: 68 MEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGD 127
Query: 121 QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-K 179
+ RPFG+S LI G D P+LY TDPSGTF A A G S L++ Y K
Sbjct: 128 EESMSRPFGVSLLIAGHD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
Query: 180 DTSGKETIKLAIRALLEVVESG--GKNIEIA 208
+ + +E +A+ L +V+E N++IA
Sbjct: 186 ELTLQEAETIALSILKQVMEEKVTPNNVDIA 216
>Os03g0180400 Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S proteasome alpha
subunit A) (20S proteasome subunit alpha-1)
Length = 246
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 133/235 (56%), Gaps = 10/235 (4%)
Query: 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTVVLGVEKKSTPKLQDSRSM 60
A YDR IT+FSP+G L+QVEYA +AV+ G ++GVRG D+V + +KK KL D S+
Sbjct: 7 AGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
Query: 61 RKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120
+ + +I L GL ADAR L+ +AR E R + V+ + ++IA Q YT
Sbjct: 67 THLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYT 126
Query: 121 QSGGVRPFGLSTLIVGFDPYTEKPA-LYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK 179
Q +RP G+ +++G+D EK A L++ DP+G F KA + G FLEK K
Sbjct: 127 QHAYMRPLGVVAMVLGYDE--EKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 184
Query: 180 DT---SGKETIKLAIRALLEVVESGGKNIEIAV-MTHKDG--LRELEEAEIDEYV 228
D S +ET+++AI AL V++ K EI V + KD R L EID+++
Sbjct: 185 DDPQFSYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHL 239
>Os07g0468800 Similar to Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S
proteasome alpha subunit C) (20S proteasome subunit
alpha-3)
Length = 207
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMR 61
RYD +T+FSP+G L+QV+YA+EA+ +A+ V D VVL EKK T KL Q S S
Sbjct: 55 RYDSRMTIFSPEGRLYQVQYAMEAIGNAGSALCVLAADGVVLVGEKKVTSKLLQTSCSAE 114
Query: 62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121
K+ +D+H+A A AG+ +DA +L+N AR+ Q + L+ ++P+ VE + + + +Q YTQ
Sbjct: 115 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYILSYQEPIPVEQLIQSLCHTKQGYTQ 174
Query: 122 SGGVRPFGLSTLI 134
GG+RPFG+S L
Sbjct: 175 FGGLRPFGVSFLF 187
>Os01g0811100 Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha
subunit G) (20S proteasome subunit alpha-7)
Length = 249
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 96/173 (55%), Gaps = 2/173 (1%)
Query: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKI 63
YD ++T FSPDG +FQVEYA +AV VG++ D +VLGVEK T K+ S R+I
Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRI 67
Query: 64 ASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSG 123
S+ H LA AGL AD R +++RA+ E S+ +P++V+ + +A T
Sbjct: 68 HSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYW 127
Query: 124 GVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEK 176
+RPFG ++ G+D + P LY +PSG + A G+ + + +EK
Sbjct: 128 WLRPFGCGVILGGYD--RDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEK 178
>Os02g0133800 Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S proteasome alpha
subunit F) (20S proteasome subunit alpha-6) (Proteasome
component C2)
Length = 270
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 114/218 (52%), Gaps = 10/218 (4%)
Query: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRK 62
+YD +T +SP G LFQVEYA+EAV++G+A VG+R VL K+ +L S RK
Sbjct: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SSHQRK 62
Query: 63 IASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQS 122
+ + H +A AGL AD RVL R EC +H + P+ V + +A Q TQ
Sbjct: 63 VFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQR 122
Query: 123 GGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEK---NYK 179
RP+G+ L+ G D LY PSG + ++A A G S + + FLE+ Y
Sbjct: 123 SWKRPYGVGLLVAGLD--ESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
Query: 180 DTSGKETIKLAIRALLEVVES---GGKNIEIAVMTHKD 214
D + ++ IK A+ A+ E ++ N +A++ KD
Sbjct: 181 DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKD 218
>Os07g0614100 Alpha 1-2 subunit of 20S proteasome
Length = 253
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 5/202 (2%)
Query: 2 ARYDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSM 60
A Y+R IT+FSP+G L Q++YA AV+ G +VGVRG D+V + +K KL D ++
Sbjct: 21 ADYERFITLFSPEGRLCQLDYAFNAVKLAGITSVGVRGDDSVYVLTHRKED-KLHDPTTI 79
Query: 61 RKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120
+ ++ I L G+ D R + AR R ++ + ++IA Q T
Sbjct: 80 TNLFAITDRIGLLATGMPGDGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIRT 139
Query: 121 QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKD 180
Q +RP+G+ ++I G D P L+ DP+G F A KA + G + FLE+ K
Sbjct: 140 QHAQIRPYGVVSMIFGIDEEKGTPELFTCDPAGQFFAHKATSAGPKEKEVMNFLEERMKS 199
Query: 181 T---SGKETIKLAIRALLEVVE 199
S T LA AL V+E
Sbjct: 200 KPSLSSGTTKGLAKSALKHVLE 221
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,337,767
Number of extensions: 281751
Number of successful extensions: 717
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 13
Length of query: 249
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,918,829
Effective search space: 1799743179
Effective search space used: 1799743179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)